Basic Statistics
Measure | Value |
---|---|
Filename | SRR936072_2.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 5765685 |
Sequences flagged as poor quality | 0 |
Sequence length | 77 |
%GC | 46 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 7902 | 0.13705223230197278 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
ATTCGCG | 800 | 0.0 | 28.39971 | 56 |
CGCGGAA | 825 | 0.0 | 26.682684 | 59 |
AATTCGC | 940 | 0.0 | 25.303371 | 55 |
TCGCGGA | 880 | 0.0 | 24.610693 | 58 |
CTCGCGC | 950 | 0.0 | 24.28417 | 36 |
TCGCGCT | 965 | 0.0 | 23.909185 | 37 |
CGGTTAC | 665 | 0.0 | 23.484818 | 4 |
CCTCGCG | 1025 | 0.0 | 22.852753 | 35 |
CGATCGT | 1045 | 0.0 | 22.415962 | 1 |
CGCGCTT | 1090 | 0.0 | 21.819744 | 38 |
CAATTCG | 1115 | 0.0 | 21.332361 | 54 |
CGCTCCG | 1150 | 0.0 | 20.680246 | 25 |
AACTCGA | 1215 | 0.0 | 19.281914 | 13 |
ACTCGAG | 1285 | 0.0 | 18.783031 | 14 |
GCGTAAG | 695 | 0.0 | 18.387346 | 38 |
TGCGTAA | 725 | 0.0 | 18.115173 | 37 |
ATCGTTC | 1335 | 0.0 | 17.547033 | 3 |
TTCGCGG | 1375 | 0.0 | 16.525475 | 57 |
GCGCCCT | 1410 | 0.0 | 16.3604 | 31 |
AAACTCG | 1445 | 0.0 | 16.214651 | 12 |