FastQCFastQC Report
Thu 26 May 2016
SRR936062_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR936062_1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10
Sequences flagged as poor quality0
Sequence length125
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCTTTATCAGCAGGAGGGGAACCCAGGTCTGTGCCGACCCCAGCGATCG110.0No Hit
CCTCCAGTGTCTTCTCTTAGAGTTGTACCTGATTTTGTTACCAGTTTTCA110.0No Hit
GTGCACAACTTCCATGTGCTCTTTCATCTTTGACTCTGGGATGGGCTCTT110.0No Hit
CTTCTTCATCGTTCCCTCTGGCAGAGGAGGAAGGTTGTGCTCCGTACGGC110.0No Hit
CACCATACCACCTAGAAAGCGTTTGAACAATGCAAATGGCAGCGCTCAAT110.0No Hit
GTATAACCCTGGTTGTCCTGGCCTCAAACTCAGAGCTCAGTCTGCCTCTG110.0No Hit
CTTCACAGGACACCTCCCAAAACCCATCATCTGGGCTGAGCCAGGCTCTG110.0No Hit
AATGGGGACCCGGGGAGGTAGTGACGAAAAAAAAAAAAAAAAAAAAAAAA110.0No Hit
GCCGGAGCCCCTAGTGGTCAAGGGAAAACGAATTCCTGGAGGCCCTCAGA110.0No Hit
GATGTTAGAAGGAGGGCTGAAAAGGCTCCAGTTAATGGTCATGGACTTGG110.0No Hit

[OK]Adapter Content

Adapter graph

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)