FastQCFastQC Report
Thu 26 May 2016
SRR936059_2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR936059_2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10
Sequences flagged as poor quality0
Sequence length77
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAGGAAACAACTCGAAGATCTCAATTACTGTCTCTTATACACATCTGGC110.0No Hit
ATCAAGCCCATGTACTCCTGTCTCTTATACACATCTGACGCTGCCGACGA110.0No Hit
CTCCAGGCATACGCGTATAACCTGTCTCTTATACACATCTAACGCTGCCG110.0No Hit
CTCCCTGGACCCATCCCCAGATCCCATGGGGACATGTGAACCTTGATCTC110.0No Hit
TGGGGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCTGGAC110.0No Hit
TTTAGGTTGAGTTACTTAACAATTTAGACTTATCTTAACAATTTGTCAGG110.0No Hit
AATATTTCCATCCAAAGAAAAATGGAGGGACAAGTAATATCTGTCTCTTA110.0No Hit
AATGACCTGGACTTGCTAAGAAAAAAGAAAAAGGACTGAAAAGTCCCATG110.0No Hit
AGCTCCTACTCCGGATCAGCCATGACCTCTCAGATTCGTCAGAATTATTC110.0No Hit
ACGGCCCCCGCGATCGTTCTGAAACTCGAGGAGACGCTCCGCGCCCTCGC110.0No Hit

[FAIL]Adapter Content

Adapter graph

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)