FastQCFastQC Report
Thu 26 May 2016
SRR936058_2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR936058_2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11
Sequences flagged as poor quality0
Sequence length77
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAGGAAACAACTCGAAGATCTCAATTACTGTCTCTTATACACATCTGAC19.090909090909092No Hit
CACCAAGCTGAGGACATTTTCTTTCATAAGTATATCAGTTCTCTATTTCC19.090909090909092No Hit
ATCCTGCTGAAGCCCACAGATGGCTGCTCCCACGCTTCCAGTTGCAATCA19.090909090909092No Hit
AGGGAGATATCTGTGAATTCCAGGTCAGCCTGATGTACATGCTTATTTAT19.090909090909092No Hit
TTGTGGAATCAAAACAGTGGTGATTAATTGGAATTTTACACACTCACACA19.090909090909092No Hit
CCAGTTAATGGTCATGGACTTGGATTAACTATGTGACTGTCTCTTATACA19.090909090909092No Hit
AATATAAATATCGAAAACTTGTTCAGAGAATTGGACATCAATAGTGACAA19.090909090909092No Hit
TTTTTTTTTTTGGGGGGGCCCCCGTTTTTTTTGGGGGCCCCCCCCCCCCC19.090909090909092No Hit
CTGAGTCCAGCAGGGCCAAATCCCGCCTCCTGCCCAACATGCCAAAGCTG19.090909090909092No Hit
GCAGTACATAATTTACACAGAAGCAATGCTGTCACCTGTCTCTTATACAC19.090909090909092No Hit
ATGTCAAAGGCCCCGTTCGAGAGCTGTCTCTTATACACATCTGACGCTGC19.090909090909092No Hit

[FAIL]Adapter Content

Adapter graph

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)