FastQCFastQC Report
Thu 26 May 2016
SRR936058_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR936058_1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11
Sequences flagged as poor quality0
Sequence length125
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TATCCAGGGACCCAGCCCTAGGCCAGAAGCTCTGCTACTCCTTGTGGCTG19.090909090909092No Hit
ACTAATGACTGCTCATCGACTATGCAGACTTTCACAGAGGAAATAGAGAA19.090909090909092No Hit
TAATTGAGATCTTCGAGTTGTTTCCTCTTTTGGTCACATAATAATTTGAC19.090909090909092No Hit
ATCAACGCAGAGTACATGGGCGAGGGCTGAGCCCTCAATAAACACTGGTG19.090909090909092No Hit
GTGACAGCATTGCTTCTGTGTAAATTATGTACTGCAAAAATTTTTTTAAA19.090909090909092No Hit
TTTTTATTCTGAGGCTTTAGCATAAGGTGATCTTGGGTAGTCAGTCATCT19.090909090909092No Hit
GACCTTCATCGCTCTGTGCGCTACCGACTTCAAGTTTGCCATGTACCCGC19.090909090909092No Hit
TTATTAAACGGATGGCTCCCAGCATTATGAAAAGCCTGATGGATCACACC19.090909090909092No Hit
TCACATAGTTAATCCAAGTCCATGACCATTAACTGGAGCCTTTTCAGCCC19.090909090909092No Hit
TCTCAGGAGGGGACTTGGTGGTGGCCGAGGGGATCACCAGCTTTGGCATG19.090909090909092No Hit
CTCTCGAACGGGGCCTTTGACATTTCGGATGATAGAGCGGCTGGGGTCTG19.090909090909092No Hit

[FAIL]Adapter Content

Adapter graph

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)