FastQCFastQC Report
Thu 26 May 2016
SRR936057_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR936057_1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences22
Sequences flagged as poor quality0
Sequence length125
%GC47

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATCATGATCTTTATAATTTGAGAGGCCTTTGCTTCAAAACGAGAAGTAA14.545454545454546No Hit
TCCCCGGGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATG14.545454545454546No Hit
GAGTGGGACTAAGGTTAGTCGCACCTTCAGCTACATCAGGAATAAAATGT14.545454545454546No Hit
TGATACCACTGCTTACTCTGCGTTGATACCACTGCTTACTCTGCGTTGAT14.545454545454546No Hit
AGCTATGGCTCACTTCATGAGACTTGCACAGATCAGTTTGTATCTCTGAG14.545454545454546No Hit
GTGATTCAGATATTTTATGGGCAAATGAGTGTCCGAACCTCTAGCCTGAA14.545454545454546No Hit
CTTCCGAAGGTCCAGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAA14.545454545454546No Hit
ACGCAGAGTACATGGGGTGGAGCCGGGCGTGGAATGCGAGTGCCTAGTGG14.545454545454546No Hit
GTACTCTTTTTTTTTTTTTTTTTTTTTTGTTTTTTTGGAAAAGGGTTTTT14.545454545454546No Hit
TATCAACGCAGAGTACAAGCAGTGGTATCAACGCAGAGTACAAGCAGTGG14.545454545454546No Hit
GTTGGGGGTCTAACCGGAATTGTTTTATCCAACTCATCACTTGACATCGT14.545454545454546No Hit
GTTGGTGTCCCTCATCACCCTCAGCCTAGAGGTACAGGAGCTGCAGGCTG14.545454545454546No Hit
GGTAGAGGGTGTGAAGGTCAGGTTCCGCAGATAAAAGTCAGGCAGAGAAG14.545454545454546No Hit
AGTCGGTGCTCTTAACCATTGAGCCATCTCACCAGCCCCATAGTATTGAG14.545454545454546No Hit
GTCCTCACAGTGCTTGCCCACCAGGCTGTGGGCGTGCAGGTGGATGTTTT14.545454545454546No Hit
CTCTTGGGCTCTGAAGGCAGGAAGGAGAACTCTGCGGTGTCTCCCGATGA14.545454545454546No Hit
TCTCTGGACAGGTGCCCTGATTTTGCTTCTTCTTCCTGGAGCCTCCTAAA14.545454545454546No Hit
GAGCAACCTCAGGAATCACAGGCTGACTTGGAGACGTCTGACAGTTCTGA14.545454545454546No Hit
TTATTTTACTTCTACTCACAATTCTAGAATTTGCAGTAGCATTAATTCAA14.545454545454546No Hit
GGTGAAACTCATCAAGAAGATGGGCAACCATCTGACCAACCTCCGCAGGG14.545454545454546No Hit
AAACTAGCCAGTACAGTTACCAATTGTCAAACTTCACAGGCTGGTCCTCA14.545454545454546No Hit
TGTTGAAACAGAAGATTCATTCATGTGATCCTATTATCTGTAAAGGAAAT14.545454545454546No Hit

[FAIL]Adapter Content

Adapter graph

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)