FastQCFastQC Report
Thu 26 May 2016
SRR936056_2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR936056_2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18
Sequences flagged as poor quality0
Sequence length77
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCCTCCACTCATGAGCAGTCCCCTCCCTAGGACTTAAAACTGATGCAA15.555555555555555No Hit
GTACAATTCCACATCTGCCGCCCCCAAACAATTGAAAGCGCTGGACCAAT15.555555555555555No Hit
GTCCAGAAGCCAGGCTCCCGAGTCCTAGTCTTCCAAAAACTCATAAAAAA15.555555555555555No Hit
TAGATTTCCGGCTAGAGGTGGGTAGACTGTTCATCCTGTTCCTGCTCCTG15.555555555555555No Hit
AAAATCGTGGTTTCACTCCAATTTCTTGTATATTGGAATCATTACCATCT15.555555555555555No Hit
AGTGGGTCTCAGGAAGTCAGACATCAGAGCAAAGGGCTCGGAGACTCTCC15.555555555555555No Hit
TACATATAATAAATAAATCCTGTCTCTTATACACATCTGACGCTGCCGAC15.555555555555555No Hit
GTTGGGGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCTGG15.555555555555555No Hit
GGCCATTTCCGGGCAGAAGCATCACACCCTAAGGTTTCGGTTATTAAGTG15.555555555555555No Hit
CTTCCTCACCATCTCCCCGAAGCGCCTGGGGGAGCTGCTCAAGGATAACA15.555555555555555No Hit
TACAGCAGAAAAGAGTCCTCTTCAACAAGGGTGTTCCTGAGCTGTCTCTT15.555555555555555No Hit
AAGACTGTTTTTGTTAGGTACAGTCGCAGTGCCTGTACAACTGCCCTACG15.555555555555555No Hit
TTTTTTTTTTTTTTTTTTTTTGTTTTTTTTTTAACATCAGTTTTTTTTTC15.555555555555555No Hit
GCACTTCACTGTTCTTGAAGACTTGAATGGTTTCCAGTACCTGTCTCTTA15.555555555555555No Hit
TGATTTCATCTCAGCTAGATATTACCCGGCTTAAGCTTGTATCAGAACCA15.555555555555555No Hit
AAAGAATGAGGCTCTGAAAGAGAAGGCAGATTCTCTGGCCAAGGAGATCC15.555555555555555No Hit
TTTATGCAAGGAGATGCTAGGGCCACAGTTGGTGTGCCTATTCGCACATA15.555555555555555No Hit
CGATGAGTCCGGCCCCTCCATCGTGCACCGCAAGTGCTTCTAGGCGGACT15.555555555555555No Hit

[FAIL]Adapter Content

Adapter graph

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)