FastQCFastQC Report
Thu 26 May 2016
SRR936056_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR936056_1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18
Sequences flagged as poor quality0
Sequence length125
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATTGAAAATGTAAACGAAAAAAAAAAAAAAAAAAAAAAAAAAAATACTC15.555555555555555No Hit
GATTTATTTATTATATGTAAGTACACTGTAGATGTCTTCAGACCTGTCTC15.555555555555555No Hit
ACGCAGAGTACATGGGGGAACAAGCCCGTGGAACCTGGAAGCCAGAGAAC15.555555555555555No Hit
ATTGTAGATTCTGCTCCACTACCCGAGGAGGGAAACGCCTCAGTGAACTA15.555555555555555No Hit
CTTCTATCAGGTCTTTCAGATACTGGATCTCCTTGGCCAGAGAATCTGCC15.555555555555555No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCCA15.555555555555555No Hit
GAGCACCCGACTGCTCTTCCGAAGGTCCAGAGTTCAAATCCCAGCAACCA15.555555555555555No Hit
CCCTACCAGACAAATTTACTCGGGGAGAGTCTCCGAGCCCTTTGCTCTGA15.555555555555555No Hit
AGTTAGTTGCATTGGTTTTGGTTTTTTTCCTCTCTTCGCCAAATTCTATG15.555555555555555No Hit
CATTATTAGGGTAGTCTTTGGGGCTTTGGAATGTGTCTGGTTCTGATACA15.555555555555555No Hit
GGTAGCATTCCCACGAATAAATAATATAAGTTTTTGACTCCTACCACCAT15.555555555555555No Hit
GTACTGGAAACCATTCAAGTCTTCAAGAACAGTGAAGTGCTAAGTTTTTT15.555555555555555No Hit
GTTGAGTGTCAGTGCAAAGGACATTCCCAGCACCTGTATCACACATACAC15.555555555555555No Hit
GCTTGCTGTTATCCTTGAGCAGCTCCCCCAGGAGCTTCGGGGAGATGGTG15.555555555555555No Hit
GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGTTTTTGGGA15.555555555555555No Hit
GAATAACCCTGGTCGGTTTGATGTTACTGTTGCTTGATTTAGTCGGCCTG15.555555555555555No Hit
CTCAGGAACACCCTTGTTGAAGAGGACTCTTTTCTGCTGTAGCCAGATCC15.555555555555555No Hit
GACCTACCTGTGGCCTAAAGAAATGGAAGGATTCATAAGGGGAGCAGATT15.555555555555555No Hit

[FAIL]Adapter Content

Adapter graph

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)