FastQCFastQC Report
Thu 26 May 2016
SRR936049_2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR936049_2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9
Sequences flagged as poor quality0
Sequence length77
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCCTTGAGCCTCTCCGCAGAGCCATGAGTGCAGCACCGGGGTGGCTTGCA111.11111111111111No Hit
AACTGCGAATGGCTCATTAAATCAGTTATGGTTCCTTTGGTCGCTCGCTC111.11111111111111No Hit
AACTTTCTGAAATGGGGCAGAACTGCTTGGTTGTCTTTTCCCATGTAACT111.11111111111111No Hit
TCTGCCGCTCCCCTCCGCAATTGTAGATCGCACAATGGATCTGAGCCGCT111.11111111111111No Hit
AAGTATCTGGGGGGACAGTGGGTTTTTCCATGTGAGAAGCAGTGTCTGGT111.11111111111111No Hit
TGGCTCTGGACACACAGGTTCCTCAGACAGACACAGACGACAAAACAAGC111.11111111111111No Hit
GGGACAAGTGGCGTTCAGCCACCCGAGATTGAGCAATAACAGGTCTGTGA111.11111111111111No Hit
GAAAAGGATCTAGAGACTATGGCCTAGATGTTAGAATGAAGAGCCAGAGT111.11111111111111No Hit
TTGCTGGAATGTGTACATCTACACTAAAGACTAAAAACAAACCAATTTTC111.11111111111111No Hit

[FAIL]Adapter Content

Adapter graph

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)