FastQCFastQC Report
Thu 26 May 2016
SRR936049_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR936049_1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9
Sequences flagged as poor quality0
Sequence length125
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GAATTAGTCCCTTTCTGTATCTTTTTTTTTTTTCCATGAACAGTTTTCCT111.11111111111111No Hit
ATATTACTATGCTTAAGTTACATGGGAAAAGACAACCAAGCAGTTCTGCC111.11111111111111No Hit
TACCACAGTTATCCAAGTAGGAGAGGAGCGAGCGACCAAAGGAACCATAA111.11111111111111No Hit
GGCTGTAAGTCTTCACCAGACACTGCTTCTCCCATGGAAAAACCCACTGT111.11111111111111No Hit
CATGGGAATTCCTCGTTCATGGGGAATAATTGCAATCCCCGATCCCCATC111.11111111111111No Hit
CTTTTATACAGATGTCCGATTGTTGTCATTTGGCTCTGCAGCTTGTTTTG111.11111111111111No Hit
ATCAACGCAGAGTACATGGGCACAGGCTCTGCGCCCAGAGCCCAGAAGGC111.11111111111111No Hit
ATACACATCTCCGAGCCCACGAGACTCCTGAGCATCTCGTATGCCGTCTT111.11111111111111RNA PCR Primer, Index 26 (100% over 22bp)
TCACTACTGATAGGAGGTTAATATTTCTGTGTAGAAATGAAAATTGGTTT111.11111111111111No Hit

[FAIL]Adapter Content

Adapter graph

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)