FastQCFastQC Report
Thu 26 May 2016
SRR936047_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR936047_1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10
Sequences flagged as poor quality0
Sequence length125
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTCACAACCATCCGTAAGGAGATCTGACTCTCTCTTCTGGAGTGTCTGA110.0No Hit
GCCCTAGCAATCGTTCACCTCCTCTTCCTCCACGAAACAGGATCAAACAA110.0No Hit
CATTCATGCTGTCTCCATCTGCAGTCTCTGCCATTTCTTCATCTTCATCA110.0No Hit
ACGCAGAGTACATGGGGACCACAAGGCGCAGGCACTGAAAAGCAGGGTAA110.0No Hit
CTTATTAGTTATTTGACAATGACATGCAATGTATTTAGATCACATCCACT110.0No Hit
GTAGTAAGTAACTACATGTGAAATAATTCCAAATCCTGGGAGGATAAGAA110.0No Hit
AGAGTCTAGGGGAAAGGGGAGTTAGAGTAGTGGGGCAGACCTGTAGGCAC110.0No Hit
CATTTCTGACACTTGCACTGTTTAGATGGAAAGAACTCAGCCACAAAACG110.0No Hit
GTTTGCTGCCTGTGGATCTTCTATATTCACAGTGTCCCAGTTGCTTCTGA110.0No Hit
GAGTACATGGGGACCGCTGGCTGCTGGCCGAGATGCTCGGAGACCTGACT110.0No Hit

[FAIL]Adapter Content

Adapter graph

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)