FastQCFastQC Report
Thu 26 May 2016
SRR936046_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR936046_1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11
Sequences flagged as poor quality0
Sequence length125
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AATGAGAAGCAGCCAAGCTGGAAGGGACTCCAGCAGAAGCAAAGGTCTTA19.090909090909092No Hit
CTTGAGTCTTGCAATACAGCAAAAAATGATTTACTACAGCTTGTACAGTG19.090909090909092No Hit
GTAGTGTCTTGCCCCAAAGAATTTGAAAAACCTGGAGCTTGTCCCAAGCC19.090909090909092No Hit
ATTTTATTTATCCCTAAGCCTATCACCAATCTCTGAGAGCTAGTATATTT19.090909090909092No Hit
AGGTGACTCTCTGTGCATTTAGGGACAACCTAGTCTACATAGCAAGTTCC19.090909090909092No Hit
CCCAGAGGACATTTAGCAATGTCTTGAAACATTTTCTAGCTGTTACAATT19.090909090909092No Hit
GGCTAGAGCTCAGCAGGTACAAACCCCTCCAAAGGATCCAGGTTCAATTA19.090909090909092No Hit
CTACAGTTTGTCTCAGAGGAATCCAAGGATTCTTTTTCAGACAAGTTGTA19.090909090909092No Hit
GCTTATTAGAGGTGAGTTTCATGCTGTACACTGACCACTATCAGGTCATG19.090909090909092No Hit
GTAAGCAGTGGTATCAACGCAGAGTAAGCAGTGGTATCAACGCAGAGTAA19.090909090909092No Hit
AAAGAAAAGTGTAATTCTAGTATTAACATCAGTAAATTTTGAACCTGTGA19.090909090909092No Hit

[WARN]Adapter Content

Adapter graph

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)