Basic Statistics
Measure | Value |
---|---|
Filename | SRR936028_1.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1921174 |
Sequences flagged as poor quality | 0 |
Sequence length | 125 |
%GC | 45 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 14845 | 0.7727046066623846 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 10330 | 0.5376920570442865 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 7765 | 0.40417994413832375 | No Hit |
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 2319 | 0.12070744242843177 | No Hit |
GTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 1956 | 0.10181274574817274 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGTATCA | 1475 | 0.0 | 52.868847 | 100-101 |
CGTACAT | 1750 | 0.0 | 47.792404 | 100-101 |
CGGTATC | 1305 | 0.0 | 46.75563 | 100-101 |
GGTATCA | 10480 | 0.0 | 41.45209 | 1 |
AGTATCA | 3120 | 0.0 | 40.73464 | 100-101 |
TACGCAG | 1130 | 0.0 | 40.036465 | 100-101 |
CCGTATC | 680 | 0.0 | 39.83117 | 100-101 |
TCGTACA | 870 | 0.0 | 39.68527 | 100-101 |
AGGTATC | 2205 | 0.0 | 39.550285 | 100-101 |
CCCGGTA | 350 | 0.0 | 39.11681 | 98-99 |
ACGTATC | 475 | 0.0 | 38.22318 | 100-101 |
TCCGTAC | 290 | 0.0 | 36.94691 | 98-99 |
GGGTATC | 1220 | 0.0 | 36.83899 | 100-101 |
CCGTACA | 800 | 0.0 | 36.83289 | 100-101 |
TCGAGTA | 405 | 0.0 | 36.74562 | 100-101 |
TTTACGC | 320 | 0.0 | 36.2734 | 98-99 |
CGAGTAC | 1135 | 0.0 | 36.18877 | 100-101 |
GCGTATC | 405 | 0.0 | 36.010708 | 100-101 |
TCGTATC | 420 | 0.0 | 34.724613 | 100-101 |
ATATCAA | 2220 | 0.0 | 34.590538 | 100-101 |