SRR935990_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR935990_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	475646
Sequences flagged as poor quality	0
Sequence length	125
%GC	50

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
ACGCAGAGTCGCCGGGCAATTCACGCATTAACCGTTCATCCTTTCCCGCA	1525	0.32061659301245043	No Hit
GTATCAACGCAGAGTCGCCGGGCAATTCACGCATTAACCGTTCATCCTTT	1464	0.3077919292919524	No Hit
GGTATCAACGCAGAGTCGCCGGGCAATTCACGCATTAACCGTTCATCCTT	1392	0.2926546212939875	No Hit
GGGTAGATATCGACGCGCATGCGGGAAAGGATGAACGGTTAATGCGTGAA	1038	0.21822952363732695	No Hit
ATTCACGCATTAACCGTTCATCCTTTCCCGCATGCGCGTCGATATCTACC	1026	0.21570663897099943	No Hit
TATCAACGCAGAGTCGCCGGGCAATTCACGCATTAACCGTTCATCCTTTC	979	0.20582534069455016	No Hit
GTATCAACGCAGAGTCGCCGGACAATTCACGCATTAACCGTTCATCCTTT	706	0.1484297145356	No Hit
ACGCAGAGTCGCCGGACAATTCACGCATTAACCGTTCATCCTTTCCCGCA	622	0.13076952187130764	No Hit
GGTATCAACGCAGAGTCGCCGGACAATTCACGCATTAACCGTTCATCCTT	605	0.12719543526067706	No Hit
GGGGTAGATATCGACGCGCATGCGGGAAAGGATGAACGGTTAATGCGTGA	579	0.12172918515030086	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TATGGGC	25	0.002058786	71.37654	4
CACTCGT	15	0.004233022	59.511726	84-85
TAGAATC	30	0.004240543	59.480442	2
GTTTACG	45	3.1528185E-4	52.943867	1
TTTACGG	55	8.537169E-4	43.258503	2
TATGGGT	55	8.537169E-4	43.258503	4
TAACAAC	355	0.0	41.944965	1
GGAAACA	625	0.0	41.93154	1
GTGGAAT	225	0.0	37.060707	1
TCTATAC	65	0.001940888	36.60335	3
GCAGAGA	830	0.0	35.11496	3
GTGTACG	85	1.6985707E-4	35.036385	1
GTATACG	140	7.975541E-8	34.035343	1
TAGGGCT	70	0.002791846	33.988827	4
TATACGG	140	8.072129E-8	33.988827	2
AGTAAAG	350	0.0	33.988827	2
GTATTAG	90	2.3763499E-4	33.089916	1
GTAACAA	145	1.0855547E-7	32.86171	1
TAAGTCA	110	2.0418567E-5	32.44388	5
GTACCAG	130	1.7192397E-6	32.071762	1