SRR935982_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR935982_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	454890
Sequences flagged as poor quality	0
Sequence length	125
%GC	49

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACAAGAGGCAATCTCGTATGCCGT	7824	1.7199762579964386	No Hit
ATACACATCTCCGAGCCCACGAGACAAGAGGCAATCTCGTATGCCGTCTT	4296	0.9444041416606214	RNA PCR Primer, Index 33 (95% over 22bp)
ACACATCTCCGAGCCCACGAGACAAGAGGCAATCTCGTATGCCGTCTTCT	2392	0.5258414122095452	RNA PCR Primer, Index 33 (95% over 24bp)
ACGCAGAGTCGCCGGGCAATTCACGCATTAACCGTTCATCCTTTCCCGCA	1157	0.2543472048187474	No Hit
GTATCAACGCAGAGTCGCCGGGCAATTCACGCATTAACCGTTCATCCTTT	1116	0.24533403680010551	No Hit
GGTATCAACGCAGAGTCGCCGGGCAATTCACGCATTAACCGTTCATCCTT	1070	0.23522170194992198	No Hit
ATTCACGCATTAACCGTTCATCCTTTCCCGCATGCGCGTCGATATCTACC	973	0.21389786541801317	No Hit
GGGTAGATATCGACGCGCATGCGGGAAAGGATGAACGGTTAATGCGTGAA	840	0.18466002769900414	No Hit
TTATACACATCTCCGAGCCCACGAGACAAGAGGCAATCTCGTATGCCGTC	799	0.17564685968036228	No Hit
CACATCTCCGAGCCCACGAGACAAGAGGCAATCTCGTATGCCGTCTTCTG	698	0.1534436896832201	RNA PCR Primer, Index 15 (95% over 24bp)
TATCAACGCAGAGTCGCCGGGCAATTCACGCATTAACCGTTCATCCTTTC	691	0.15190485611906174	No Hit
GGGGTAGATATCGACGCGCATGCGGGAAAGGATGAACGGTTAATGCGTGA	505	0.11101584998571083	No Hit
CATCTCCGAGCCCACGAGACAAGAGGCAATCTCGTATGCCGTCTTCTGCT	500	0.10991668315416914	RNA PCR Primer, Index 33 (96% over 27bp)
CTTATACACATCTCCGAGCCCACGAGACAAGAGGCAATATCGTATGCCGT	468	0.10288201543230231	No Hit
GTATCAACGCAGAGTGGGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	464	0.10200268196706896	No Hit
TATACACATCTCCGAGCCCACGAGACAAGAGGCAATCTCGTATGCCGTCT	464	0.10200268196706896	RNA PCR Primer, Index 33 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATAGGTC	20	8.4326457E-4	89.37128	4
TATAGGT	20	8.4326457E-4	89.37128	3
ATTAGGG	50	8.834468E-8	71.497025	3
GGACGTC	25	0.0020566343	71.39485	6
GTATTAG	60	3.0911178E-7	59.659664	1
TAGCGTT	30	0.004212193	59.580853	4
TCACGCG	30	0.0042361175	59.495712	9
TAGGCGG	60	3.1504896E-7	59.495712	9
CTTTACA	115	0.0	57.065765	1
TGTGTAT	85	9.804353E-10	55.99596	9
CGTCAGA	75	2.2839231E-8	55.6088	2
TATTAGG	65	5.4229713E-7	54.99771	2
GGTATAG	35	0.007711104	51.136856	1
GTACGTT	35	0.0077515114	51.0693	3
AAGTGTA	35	0.007795463	50.996323	9
ATGTGTA	100	4.14002E-9	47.59657	8
TCAGATG	95	1.4691068E-7	43.901684	4
TAACGTT	35	5.4533913E-5	42.496937	14-15
AGTAGGC	85	3.4779587E-6	41.99697	7
GTCTAGG	185	0.0	41.923008	1