SRR935949_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR935949_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	437875
Sequences flagged as poor quality	0
Sequence length	125
%GC	52

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTCGCCGGGCAATTCACGCATTAACCGTTCATCCTTT	936	0.2137596345989152	No Hit
ACGCAGAGTCGCCGGGCAATTCACGCATTAACCGTTCATCCTTTCCCGCA	865	0.19754496146160436	No Hit
GGTATCAACGCAGAGTCGCCGGGCAATTCACGCATTAACCGTTCATCCTT	773	0.1765343990864973	No Hit
GGGTAGATATCGACGCGCATGCGGGAAAGGATGAACGGTTAATGCGTGAA	729	0.16648586925492437	No Hit
ATTCACGCATTAACCGTTCATCCTTTCCCGCATGCGCGTCGATATCTACC	615	0.14045104196403083	No Hit
TATCAACGCAGAGTCGCCGGGCAATTCACGCATTAACCGTTCATCCTTTC	546	0.12469312018270054	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATAAGGG	55	1.9917934E-9	75.709755	3
TATAAGG	70	1.7462298E-10	67.984276	2
GTATAAG	80	5.638867E-10	59.601948	1
CTTAAGG	40	1.7727909E-4	59.486237	3
TCTTAAG	40	1.7727909E-4	59.486237	2
GCGGTCT	35	0.0078001763	50.98821	9
GGAAACA	130	0.0	50.432415	1
ACAAAGT	55	8.5323316E-4	43.26272	9
TTCCATA	55	8.5323316E-4	43.26272	2
GTCTAGG	110	4.6286732E-7	37.92851	1
ATACTGG	110	4.699723E-7	37.854877	6
CTTGGGC	40	1.198868E-4	37.178898	16-17
TACTGGT	115	6.65701E-7	36.209015	7
TACTAGG	165	2.3646862E-10	36.052265	2
CACCGAT	85	1.7110826E-4	34.991905	8
TTAATGG	120	9.287778E-7	34.70031	4
GTACTGG	155	5.0204108E-9	34.60758	1
TAAGGGC	105	1.4839432E-5	33.992138	4
TATACTG	105	1.4839432E-5	33.992138	5
CACAAAG	140	8.0626705E-8	33.992138	9