SRR935945_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR935945_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	681639
Sequences flagged as poor quality	0
Sequence length	125
%GC	52

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
TCCCTGTTCACTCGCCGTTACTGAGGGAATCCTGGTTAGTTTCTTTTCCT	1096	0.16078892199536704	No Hit
GTATCAACGCAGAGTGCCGGTATTTAGCCTTAGATGGAGTTTACCACCCG	898	0.13174128827722592	No Hit
ACGCAGAGTCGCCGGGCAATTCACGCATTAACCGTTCATCCTTTCCCGCA	843	0.12367250113329784	No Hit
GTATCAACGCAGAGTCGCCGGGCAATTCACGCATTAACCGTTCATCCTTT	817	0.11985816539253182	No Hit
GGTATCAACGCAGAGTGCCGGTATTTAGCCTTAGATGGAGTTTACCACCC	808	0.11853781840534358	No Hit
GTGCCGGTATTTAGCCTTAGATGGAGTTTACCACCCGCTTTGGGCTGCAT	759	0.11134926258620766	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCTACGG	60	2.1956146E-5	49.571198	2
TTAAGGT	75	1.4724119E-6	47.588352	4
TAAGGTA	100	4.150934E-9	47.58835	5
GTCTAAG	105	6.350092E-9	45.35551	1
GTTAGAG	140	4.0017767E-11	42.4896	3
AGTTAGA	140	4.0017767E-11	42.4896	2
AGTATCT	85	3.4846562E-6	41.989723	2
TAAGGGT	85	3.4846562E-6	41.989723	4
GGAAACA	315	0.0	41.575882	1
GTCTTAG	110	4.678368E-7	37.88216	1
TGTTAGG	80	1.19868404E-4	37.178402	2
AGTAAGG	395	0.0	36.14305	2
AGCGTAA	60	9.3079325E-7	34.69984	10-11
CACTAGG	35	0.0027885013	34.001656	66-67
AAGGTAG	140	8.074858E-8	33.99168	6
GTGTTAG	90	2.3851158E-4	33.071728	1
CTTAAGG	110	2.0419746E-5	32.4466	3
AGTTAGG	275	0.0	32.4466	2
TGAAAGT	65	1.7397124E-6	32.03062	16-17
GAAAGTG	65	1.7397124E-6	32.03062	18-19