SRR935940_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR935940_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	404820
Sequences flagged as poor quality	0
Sequence length	125
%GC	51

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
ACGCAGAGTCGCCGGGCAATTCACGCATTAACCGTTCATCCTTTCCCGCA	834	0.20601748925448346	No Hit
GTATCAACGCAGAGTCGCCGGGCAATTCACGCATTAACCGTTCATCCTTT	824	0.20354725557037695	No Hit
GGTATCAACGCAGAGTCGCCGGGCAATTCACGCATTAACCGTTCATCCTT	716	0.17686873178202658	No Hit
GGGTAGATATCGACGCGCATGCGGGAAAGGATGAACGGTTAATGCGTGAA	617	0.15241341830937205	No Hit
ATTCACGCATTAACCGTTCATCCTTTCCCGCATGCGCGTCGATATCTACC	577	0.142532483572946	No Hit
TATCAACGCAGAGTCGCCGGGCAATTCACGCATTAACCGTTCATCCTTTC	530	0.13092238525764535	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TATGGAA	30	0.004239466	59.482647	2
TAACAAC	185	0.0	54.72732	1
TGTATGG	75	1.4713933E-6	47.58612	2
AGTAATA	95	1.4877332E-7	43.829323	2
GTGGAAA	90	5.113914E-6	39.70414	1
GAAAACA	285	0.0	39.70414	1
GTGGCAC	30	0.0013101606	39.655098	20-21
TATGTGG	75	8.193317E-5	39.655098	2
GTGGAAT	200	0.0	38.711536	1
GTAATAG	110	4.700778E-7	37.852592	3
GTATAGG	175	1.0913936E-11	37.435333	1
CGAATAG	40	1.19747194E-4	37.185837	64-65
ATGGGAC	80	1.19815435E-4	37.176655	5
GACCTTA	65	0.0019401944	36.604706	9
GTGTAAC	70	0.0027739883	34.03212	1
TCGAATA	35	0.0027891113	33.998486	64-65
CTTAAAT	35	0.002792492	33.990086	12-13
TTATAGG	70	0.0027908508	33.990086	2
TTAAGAG	35	0.002792492	33.990086	7
TTAAATG	35	0.002792492	33.990086	12-13