SRR935910_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR935910_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	616238
Sequences flagged as poor quality	0
Sequence length	125
%GC	48

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA	2480	0.4024419136762095	No Hit
CTTATACACATCTCCGAGCCCACGAGACGGACTCCTATCTCGTATGCCGT	1990	0.32292718073211973	No Hit
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT	1653	0.268240517462409	No Hit
ATACACATCTCCGAGCCCACGAGACGGACTCCTATCTCGTATGCCGTCTT	1058	0.17168691317315712	RNA PCR Primer, Index 27 (95% over 23bp)
GTATCAACGCAGAGTGGGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	988	0.16032766560971573	No Hit
GGTATCAACGCAGAGTGGGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	816	0.1324163715966883	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTCGCGG	50	7.387127E-6	59.582275	2
GGTATCA	11450	0.0	54.332855	1
GTAATAT	45	3.1494812E-4	52.95772	3
GCGTCAG	35	0.007754571	51.066372	4
GTATAGT	95	2.5993359E-9	50.17047	3
GTAAGGT	185	0.0	48.30603	3
GTTCGCG	75	1.4355082E-6	47.762856	1
ACGATTT	50	5.326365E-4	47.60779	5
GTCGGTT	25	5.334852E-4	47.596207	14-15
GTCTAAG	130	1.8189894E-11	45.925823	1
TAAGGTT	205	0.0	43.593243	4
GTTCGGT	55	8.470908E-4	43.329044	3
GTACGAT	55	8.470908E-4	43.329044	3
GTCGATT	35	5.454771E-5	42.49661	14-15
TGGTCGG	160	3.6379788E-12	40.90299	9
GTATCAA	17480	0.0	40.542408	1
GTATAGG	270	0.0	39.802376	1
GTGATCG	150	8.54925E-11	39.663506	8
GTCGACG	120	2.0747393E-8	39.6635	8
TATATGG	215	0.0	38.79776	2