Basic Statistics
Measure | Value |
---|---|
Filename | SRR1364600_1.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 3666165 |
Sequences flagged as poor quality | 0 |
Sequence length | 125 |
%GC | 45 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 10492 | 0.2861846098034322 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 8303 | 0.2264764406402876 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 5530 | 0.15083881931118756 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GTATCAA | 15830 | 0.0 | 47.232346 | 1 |
GGTATCA | 9640 | 0.0 | 45.918583 | 1 |
ATCAACG | 19760 | 0.0 | 37.36736 | 3 |
TATCAAC | 20115 | 0.0 | 36.85284 | 2 |
TCAACGC | 19985 | 0.0 | 36.77154 | 4 |
CAACGCA | 20010 | 0.0 | 35.99122 | 5 |
AACGCAG | 20615 | 0.0 | 35.213825 | 6 |
GTACATG | 18070 | 0.0 | 30.365343 | 1 |
ACGCAGA | 24565 | 0.0 | 29.139397 | 7 |
TACATGG | 18475 | 0.0 | 28.908773 | 2 |
CGCAGAG | 24875 | 0.0 | 28.656551 | 8 |
ACATGGG | 19015 | 0.0 | 26.909752 | 3 |
GCAGAGT | 26910 | 0.0 | 25.449713 | 9 |
GAGTACT | 14475 | 0.0 | 24.520338 | 12-13 |
GTACTTT | 15125 | 0.0 | 23.368137 | 14-15 |
AGTACTT | 15100 | 0.0 | 23.308231 | 12-13 |
AGAGTAC | 24755 | 0.0 | 21.854961 | 10-11 |
AGTACAT | 13725 | 0.0 | 21.604223 | 2 |
TAGGACG | 910 | 0.0 | 21.578518 | 4 |
GAGTACA | 15450 | 0.0 | 20.900059 | 1 |