Basic Statistics
Measure | Value |
---|---|
Filename | SRR1364567_1.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 3861767 |
Sequences flagged as poor quality | 0 |
Sequence length | 125 |
%GC | 46 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 8500 | 0.2201064952908863 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 7614 | 0.1971636300170362 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 4680 | 0.1211880468189821 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 6725 | 0.0 | 57.887577 | 1 |
GTATCAA | 11880 | 0.0 | 51.0351 | 1 |
ATCAACG | 15265 | 0.0 | 39.289337 | 3 |
TCAACGC | 15775 | 0.0 | 37.830353 | 4 |
CAACGCA | 15810 | 0.0 | 37.708485 | 5 |
TATCAAC | 16070 | 0.0 | 37.35827 | 2 |
AACGCAG | 16075 | 0.0 | 37.123863 | 6 |
GTACATG | 15960 | 0.0 | 31.227543 | 1 |
ACGCAGA | 19075 | 0.0 | 31.035715 | 7 |
CGCAGAG | 19230 | 0.0 | 30.599916 | 8 |
TACATGG | 16380 | 0.0 | 29.451889 | 2 |
ACATGGG | 16500 | 0.0 | 28.985023 | 3 |
GCAGAGT | 21195 | 0.0 | 26.920826 | 9 |
GAGTACT | 11235 | 0.0 | 25.578297 | 12-13 |
AGAGTAC | 19270 | 0.0 | 24.03575 | 10-11 |
CAGAGTA | 20145 | 0.0 | 23.479052 | 10-11 |
GTACTTT | 12320 | 0.0 | 23.301517 | 14-15 |
AGTACTT | 12185 | 0.0 | 23.14464 | 12-13 |
CATGGGG | 9050 | 0.0 | 22.901964 | 4 |
CGTATAG | 325 | 5.9480953E-10 | 22.012142 | 1 |