Basic Statistics
Measure | Value |
---|---|
Filename | SRR1364408_2.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1386718 |
Sequences flagged as poor quality | 0 |
Sequence length | 125 |
%GC | 46 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 1560 | 0.0 | 61.046284 | 1 |
GTATCAA | 2530 | 0.0 | 51.99189 | 1 |
ATCAACG | 3060 | 0.0 | 41.813667 | 3 |
TCAACGC | 3085 | 0.0 | 41.47482 | 4 |
CAACGCA | 3250 | 0.0 | 39.369175 | 5 |
GTACATG | 7895 | 0.0 | 38.67489 | 1 |
TATCAAC | 3340 | 0.0 | 38.486507 | 2 |
AACGCAG | 3340 | 0.0 | 38.305565 | 6 |
TACATGG | 8215 | 0.0 | 36.800804 | 2 |
ACATGGG | 8580 | 0.0 | 34.749744 | 3 |
TTGTGCG | 90 | 2.3940677E-4 | 33.053623 | 9 |
ACGCAGA | 4050 | 0.0 | 31.291891 | 7 |
CATGGGA | 5750 | 0.0 | 31.256496 | 4 |
CGCAGAG | 4060 | 0.0 | 31.067148 | 8 |
CATGGGG | 3450 | 0.0 | 28.634539 | 4 |
ATGGGAT | 2370 | 0.0 | 25.36146 | 5 |
GCAGAGT | 4925 | 0.0 | 25.24827 | 9 |
GAGTACA | 5865 | 0.0 | 23.848644 | 1 |
CAGAGTA | 4715 | 0.0 | 22.839598 | 10-11 |
ATGGGAG | 2395 | 0.0 | 22.611898 | 5 |