Basic Statistics
Measure | Value |
---|---|
Filename | SRR1364390_2.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1946863 |
Sequences flagged as poor quality | 0 |
Sequence length | 125 |
%GC | 46 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GTATCAA | 2415 | 0.0 | 44.377136 | 1 |
ATCAACG | 2420 | 0.0 | 42.29981 | 3 |
CAACGCA | 2485 | 0.0 | 41.19338 | 5 |
TCAACGC | 2510 | 0.0 | 40.783085 | 4 |
GGTATCA | 1780 | 0.0 | 38.800907 | 1 |
AACGCAG | 2655 | 0.0 | 38.55477 | 6 |
GTACATG | 6275 | 0.0 | 36.245457 | 1 |
TATCAAC | 3055 | 0.0 | 34.481598 | 2 |
ACATGGG | 6660 | 0.0 | 32.616997 | 3 |
TACATGG | 6925 | 0.0 | 32.228256 | 2 |
CATGGGG | 4635 | 0.0 | 31.715572 | 4 |
ACGCAGA | 3270 | 0.0 | 31.475128 | 7 |
CGCAGAG | 3360 | 0.0 | 30.277918 | 8 |
GCAGAGT | 4510 | 0.0 | 22.689299 | 9 |
ATGGGGG | 2715 | 0.0 | 22.578377 | 5 |
ATGGGGA | 2730 | 0.0 | 21.582308 | 5 |
GTATAGG | 640 | 0.0 | 21.396944 | 1 |
GAGTACA | 5445 | 0.0 | 21.322624 | 1 |
AGGTAAG | 980 | 0.0 | 21.255304 | 2 |
TAAGGTG | 1090 | 0.0 | 20.748297 | 5 |