Basic Statistics
Measure | Value |
---|---|
Filename | SRR1364327_1.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1419819 |
Sequences flagged as poor quality | 0 |
Sequence length | 25 |
%GC | 45 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTT | 16639 | 1.1719099406332778 | No Hit |
GTACTTTTTTTTTTTTTTTTTTTTT | 13167 | 0.9273717283681935 | No Hit |
TATCAACGCAGAGTACTTTTTTTTT | 12736 | 0.8970157463733053 | No Hit |
GGTATCAACGCAGAGTACTTTTTTT | 11503 | 0.8101736911535907 | No Hit |
GAGTACTTTTTTTTTTTTTTTTTTT | 6451 | 0.454353688744833 | No Hit |
ACGCAGAGTACTTTTTTTTTTTTTT | 5200 | 0.36624386629563344 | No Hit |
GTGGTATCAACGCAGAGTACTTTTT | 2366 | 0.1666409591645132 | No Hit |
GTGGTATCAACGCAGAGTACATGGG | 2205 | 0.1553014856118984 | No Hit |
ATCAACGCAGAGTACTTTTTTTTTT | 1926 | 0.1356510935548827 | No Hit |
GTATAACGCAGAGTACTTTTTTTTT | 1884 | 0.13269297001941796 | No Hit |
GCAGAGTACTTTTTTTTTTTTTTTT | 1798 | 0.12663585992299017 | No Hit |
AAAAAAAAAAAAAAAAAAAAAAAAA | 1420 | 0.10001274810380761 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
AAGACGG | 40 | 2.7509985E-4 | 16.632835 | 5 |
CGTCGCT | 35 | 0.002175512 | 16.279615 | 14 |
TATAACG | 315 | 0.0 | 14.476379 | 2 |
TAACGCA | 345 | 0.0 | 14.32155 | 4 |
TGCGTAG | 80 | 1.2940473E-7 | 14.244663 | 14 |
GTATAAC | 355 | 0.0 | 14.185782 | 1 |
ATAACGC | 315 | 0.0 | 14.177285 | 3 |
CCGCCGA | 55 | 1.9662008E-4 | 13.813007 | 15 |
GGTATCA | 3280 | 0.0 | 13.615379 | 1 |
GACTTCG | 50 | 0.0015036735 | 13.295019 | 17 |
CGAGTGG | 165 | 0.0 | 13.245863 | 10 |
ATCACGC | 115 | 3.765308E-10 | 13.219892 | 3 |
GGACCGA | 180 | 0.0 | 13.198337 | 6 |
CCGAGTG | 180 | 0.0 | 13.197871 | 9 |
AGGACCG | 190 | 0.0 | 13.006126 | 5 |
GTGCTAT | 75 | 1.4754953E-5 | 12.669064 | 1 |
ATGCGTA | 90 | 5.4261363E-7 | 12.662369 | 13 |
GTGGTAT | 890 | 0.0 | 12.597889 | 1 |
TGGTATC | 895 | 0.0 | 12.419156 | 2 |
ACCGAGT | 185 | 0.0 | 12.327526 | 8 |