Basic Statistics
Measure | Value |
---|---|
Filename | SRR1364314_2.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 4565017 |
Sequences flagged as poor quality | 0 |
Sequence length | 25 |
%GC | 48 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
NNNNNNNNNNNNNNNNNNNNNNNNN | 12093 | 0.26490591382244577 | No Hit |
GTATCAACGCAGAGTACTTTTTTTT | 6544 | 0.14335105433342307 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
AGGACCG | 495 | 0.0 | 13.2466955 | 5 |
CGTCCGA | 65 | 5.5162294E-5 | 13.138717 | 11 |
GGACCGA | 475 | 0.0 | 12.399362 | 6 |
ACCGATT | 70 | 1.09265355E-4 | 12.213253 | 8 |
ACCGAGT | 405 | 0.0 | 11.727404 | 8 |
GGTATCA | 3160 | 0.0 | 11.415929 | 1 |
CGCATAT | 205 | 0.0 | 10.657637 | 8 |
GTATCAA | 6985 | 0.0 | 10.261131 | 1 |
CGCGCCA | 280 | 0.0 | 10.177599 | 10 |
CGAGTGG | 465 | 0.0 | 10.009796 | 10 |
CCGTATG | 115 | 1.0287E-5 | 9.912096 | 9 |
TGGTATC | 1105 | 0.0 | 9.880065 | 2 |
CAGGACC | 1230 | 0.0 | 9.812431 | 4 |
ACGCATA | 560 | 0.0 | 9.669039 | 7 |
TTGCGCG | 190 | 1.038643E-9 | 9.507981 | 18 |
GGACCGG | 150 | 2.6539965E-7 | 9.499511 | 6 |
GACCGAG | 580 | 0.0 | 9.499407 | 7 |
GACCGAT | 90 | 0.0011150192 | 9.499406 | 7 |
GTACTAG | 300 | 0.0 | 9.493245 | 1 |
GTGGTAT | 1265 | 0.0 | 9.455724 | 1 |