Basic Statistics
Measure | Value |
---|---|
Filename | SRR1364217_1.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1630453 |
Sequences flagged as poor quality | 0 |
Sequence length | 125 |
%GC | 45 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 6526 | 0.4002568611300049 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 6178 | 0.378913099610967 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 3421 | 0.20981898895583007 | No Hit |
GTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 1761 | 0.10800679320409727 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 3070 | 0.0 | 73.13301 | 1 |
GTATCAA | 5855 | 0.0 | 52.586483 | 1 |
ATCAACG | 7210 | 0.0 | 42.754826 | 3 |
CAACGCA | 7410 | 0.0 | 41.58809 | 5 |
TCAACGC | 7415 | 0.0 | 41.572796 | 4 |
AACGCAG | 7565 | 0.0 | 41.050552 | 6 |
TATCAAC | 7580 | 0.0 | 40.35629 | 2 |
ACGCAGA | 9035 | 0.0 | 34.37055 | 7 |
CGCAGAG | 9055 | 0.0 | 34.228935 | 8 |
TGGTATC | 1385 | 0.0 | 33.087063 | 2 |
GTACATG | 6300 | 0.0 | 31.19492 | 1 |
GTGGTAT | 1560 | 0.0 | 30.922237 | 1 |
GCAGAGT | 10030 | 0.0 | 30.545721 | 9 |
TACATGG | 6425 | 0.0 | 29.54846 | 2 |
ACATGGG | 6455 | 0.0 | 27.842058 | 3 |
AATACCG | 110 | 7.758848E-4 | 27.041746 | 5 |
GAGTACT | 7180 | 0.0 | 26.846725 | 12-13 |
CAGAGTA | 9950 | 0.0 | 26.426723 | 10-11 |
GTACTTT | 7595 | 0.0 | 25.379787 | 14-15 |
AGAGTAC | 9575 | 0.0 | 25.131815 | 10-11 |