Basic Statistics
Measure | Value |
---|---|
Filename | SRR1364128_2.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1856029 |
Sequences flagged as poor quality | 0 |
Sequence length | 125 |
%GC | 44 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN | 7709 | 0.41534911361837556 | No Hit |
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 2210 | 0.11907141537120379 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 2020 | 0.0 | 63.048004 | 1 |
GTATCAA | 3715 | 0.0 | 47.578037 | 1 |
TCAACGC | 4075 | 0.0 | 41.339172 | 4 |
CAACGCA | 4095 | 0.0 | 40.994133 | 5 |
ATCAACG | 4180 | 0.0 | 40.153996 | 3 |
GTACATG | 9095 | 0.0 | 39.391518 | 1 |
AACGCAG | 4325 | 0.0 | 38.538822 | 6 |
TACATGG | 9115 | 0.0 | 38.06662 | 2 |
ACATGGG | 9310 | 0.0 | 36.44023 | 3 |
TATCAAC | 5075 | 0.0 | 33.89177 | 2 |
CGCAGAG | 5295 | 0.0 | 30.805952 | 8 |
ACGCAGA | 5350 | 0.0 | 30.60053 | 7 |
CATGGGG | 3315 | 0.0 | 29.08938 | 4 |
CATGGGA | 6320 | 0.0 | 29.009258 | 4 |
GCAGAGT | 6370 | 0.0 | 25.513687 | 9 |
GAGTACA | 6260 | 0.0 | 25.097965 | 1 |
CATTCCG | 330 | 2.910383E-11 | 23.451975 | 9 |
AGTACAT | 6455 | 0.0 | 23.234684 | 2 |
ATGGGAT | 3045 | 0.0 | 22.286612 | 5 |
CAGAGTA | 6075 | 0.0 | 22.048866 | 10-11 |