SRR1043484_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1043484_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	37875
Sequences flagged as poor quality	0
Sequence length	51
%GC	51

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	727	1.9194719471947195	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	474	1.2514851485148515	No Hit
GTGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	190	0.5016501650165017	No Hit
GAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	126	0.3326732673267327	No Hit
AGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	91	0.24026402640264025	No Hit
TGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	76	0.20066006600660066	No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	68	0.17953795379537954	No Hit
CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCG	56	0.14785478547854786	No Hit
CAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGA	56	0.14785478547854786	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TGGCAGG	25	3.819533E-5	45.000004	1
AGAGGGC	25	3.819533E-5	45.000004	3
GAATGAT	25	3.819533E-5	45.000004	8
GAAGGGC	25	3.819533E-5	45.000004	3
ATGATAC	20	6.947081E-4	45.0	10
ATAGGGA	20	6.947081E-4	45.0	3
ATTGGGC	20	6.947081E-4	45.0	3
AGGGCGC	20	6.947081E-4	45.0	5
ATGCGGG	20	6.947081E-4	45.0	2
CAGAGGG	45	3.6379788E-10	45.0	2
GACGAGG	20	6.947081E-4	45.0	1
AACAGGG	20	6.947081E-4	45.0	2
TAGGGCA	20	6.947081E-4	45.0	4
GAGGGGT	20	6.947081E-4	45.0	4
TGCAGGG	45	3.6379788E-10	45.0	2
TGCGGGA	20	6.947081E-4	45.0	3
GGGCGCG	55	1.8189894E-12	44.999996	6
GAGGGCA	30	2.1101896E-6	44.999996	4
GCGAGGG	30	2.1101896E-6	44.999996	2
CGTTTTT	235	0.0	43.085106	1