SRR1043483_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1043483_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	3999678
Sequences flagged as poor quality	0
Sequence length	51
%GC	43

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	206739	5.168891095733207	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	28042	0.701106439068345	No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	21641	0.5410685560187595	No Hit
GTGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	11709	0.2927485662595839	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	9466	0.23666905185867462	No Hit
GAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	9368	0.23421885461779673	No Hit
TGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	4675	0.1168844091949402	No Hit
AGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	4658	0.11645937497968588	No Hit
CAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGA	4431	0.1107839181054075	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	52915	43.919964	1
CGACGGT	1160	42.86638	27
CGGTCTA	1205	41.265556	30
ACTACGG	240	41.249996	1
TCACGAC	1230	40.97561	24
CGTTTTA	2905	40.817554	1
CGCACTT	9225	40.78049	34
CACTTAC	9310	40.529	36
GCACTTA	9300	40.475807	35
ACTTACT	9270	40.26699	37
CCGCACT	9355	40.26189	33
CACGACG	1250	40.140003	25
CCCGCAC	9460	40.10042	32
TACGGGA	1320	40.056816	3
ACCCGCA	9445	39.925884	31
ACGGGAT	1510	39.63576	4
CTTACTG	9400	39.56649	38
TCAACGC	9940	39.295773	15
CTTATGA	9805	39.12545	25
CAACGCA	10000	39.037502	16