SRR1043482_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1043482_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	4215184
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	112737	2.674545168135009	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	50964	1.209057540548645	No Hit
GTGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	22389	0.5311511905530103	No Hit
GAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	16863	0.4000537105853505	No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	12794	0.3035217442465145	No Hit
AGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	10718	0.25427122517071615	No Hit
TGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	9007	0.21367987731970894	No Hit
CAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGA	7948	0.18855641888942454	No Hit
TTACTGGGAATTCCTCGTTCATGGGGAATAATTGCAATCCCCGATCCCCAT	5185	0.12300767890559464	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5007	0.11878485019871018	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CATTACG	25	3.8925828E-5	45.0	24
CGTTTTT	28815	0.0	43.60229	1
CGGTCTA	1535	0.0	42.068405	30
ATTGCGG	780	0.0	41.25	1
TACGGGA	570	0.0	41.05263	3
CGACGGT	1575	0.0	41.0	27
CACGACG	1605	0.0	40.93458	25
TCACGAC	1625	0.0	40.846157	24
TACGCGG	405	0.0	40.555553	1
TATCGTT	50	1.0822987E-9	40.5	45
CACTTAC	16710	0.0	40.48923	36
CGCACTT	16755	0.0	40.353626	34
GCACTTA	16770	0.0	40.344364	35
ACTTACT	16715	0.0	40.315586	37
CTTACTG	16695	0.0	40.28302	38
GCGCGAC	5830	0.0	40.02144	8
GCGATAT	135	0.0	40.0	8
ACGTAGG	355	0.0	39.929577	1
ACCCGCA	16975	0.0	39.857143	31
CCGCACT	17000	0.0	39.732353	33