SRR1043481_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1043481_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	3146857
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	101694	3.2316053764120833	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	29171	0.926988420509734	No Hit
GTGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	12813	0.40716816811186524	No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	11305	0.35924733789937074	No Hit
GAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	9429	0.2996322997835618	No Hit
CAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGA	6603	0.20982840974343606	No Hit
AGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	6599	0.20970129878796528	No Hit
TGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	5351	0.1700426806810732	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4534	0.1440802680261607	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AACGCAT	35	1.2128294E-7	45.000004	40
ACTACGT	25	3.8923565E-5	45.000004	41
CGTTTTT	27455	0.0	43.942814	1
CGTTTTA	1390	0.0	42.733814	1
TCACGAC	690	0.0	42.717392	24
CGCACTT	9685	0.0	40.818275	34
CCGCACT	9685	0.0	40.702118	33
CCCGCAC	9790	0.0	40.633297	32
ACCCGCA	9750	0.0	40.569233	31
CACGACC	1100	0.0	40.5	26
CTTACTG	9705	0.0	40.386402	38
ATGACGG	340	0.0	40.36765	1
GCACTTA	9800	0.0	40.362244	35
CGCATAC	45	1.9301297E-8	40.000004	42
ATCGGTA	45	1.9301297E-8	40.000004	26
CGGGTAC	560	0.0	39.776787	5
AGACACG	1120	0.0	39.776787	23
ACGGGCT	1745	0.0	39.71347	4
GGTACCT	1810	0.0	39.654694	7
TAGGGTA	960	0.0	39.60938	4