##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1043481_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 3146857 Sequences flagged as poor quality 0 Sequence length 51 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.473448904732564 31.0 31.0 33.0 30.0 34.0 2 30.48067262033197 31.0 31.0 34.0 26.0 34.0 3 31.47598635718115 31.0 31.0 34.0 28.0 34.0 4 35.09505071250457 37.0 35.0 37.0 32.0 37.0 5 35.42581153195077 37.0 35.0 37.0 33.0 37.0 6 35.72024848920685 37.0 35.0 37.0 35.0 37.0 7 33.59789974568275 37.0 35.0 37.0 31.0 37.0 8 34.645403969738695 37.0 35.0 37.0 31.0 37.0 9 36.676956722215216 39.0 37.0 39.0 32.0 39.0 10 36.67115315376581 39.0 35.0 39.0 32.0 39.0 11 36.45178983347512 39.0 35.0 39.0 32.0 39.0 12 36.420851980245686 39.0 35.0 39.0 32.0 39.0 13 36.40263157811111 39.0 35.0 39.0 32.0 39.0 14 37.60067298895374 40.0 36.0 41.0 33.0 41.0 15 37.70854315909493 40.0 36.0 41.0 33.0 41.0 16 37.522874093103056 40.0 35.0 41.0 32.0 41.0 17 37.48495816619567 40.0 36.0 41.0 32.0 41.0 18 37.33154286959973 39.0 35.0 41.0 32.0 41.0 19 37.19500663678076 39.0 35.0 41.0 32.0 41.0 20 36.931314006324406 38.0 35.0 41.0 32.0 41.0 21 36.85910989917877 38.0 35.0 41.0 32.0 41.0 22 36.81877505078877 38.0 35.0 40.0 32.0 41.0 23 36.76559850034495 38.0 35.0 40.0 32.0 41.0 24 36.647174307571014 38.0 35.0 40.0 31.0 41.0 25 36.54540991217586 38.0 35.0 40.0 31.0 41.0 26 36.260558392071836 38.0 35.0 40.0 31.0 41.0 27 36.14368940183809 38.0 35.0 40.0 30.0 41.0 28 35.96671154742653 37.0 35.0 40.0 30.0 41.0 29 35.90064340387885 37.0 35.0 40.0 30.0 41.0 30 35.73934468582462 37.0 34.0 40.0 30.0 41.0 31 35.56434785565407 37.0 34.0 40.0 29.0 41.0 32 35.49789996812693 37.0 34.0 40.0 28.0 41.0 33 35.179186089485476 37.0 34.0 40.0 26.0 41.0 34 35.10801952551387 37.0 34.0 40.0 25.0 41.0 35 35.01355956117485 37.0 34.0 40.0 25.0 41.0 36 34.94366315342578 37.0 34.0 40.0 25.0 41.0 37 34.83800121835851 37.0 34.0 40.0 25.0 41.0 38 34.72792726202684 37.0 34.0 40.0 24.0 41.0 39 34.599569348082866 37.0 34.0 40.0 24.0 41.0 40 34.521961754220165 36.0 34.0 40.0 23.0 41.0 41 34.424533749070896 36.0 34.0 40.0 23.0 41.0 42 34.310318200032604 36.0 33.0 40.0 23.0 41.0 43 34.12970338340764 35.0 33.0 40.0 23.0 41.0 44 33.88714104263397 35.0 33.0 40.0 22.0 41.0 45 33.66085208193445 35.0 33.0 40.0 22.0 41.0 46 33.66435462431245 35.0 33.0 40.0 22.0 41.0 47 33.642085102691354 35.0 33.0 40.0 22.0 41.0 48 33.54865060598559 35.0 33.0 39.0 22.0 41.0 49 33.50574906962725 35.0 33.0 39.0 22.0 41.0 50 33.44418891611535 35.0 33.0 39.0 22.0 41.0 51 33.02843630962576 35.0 32.0 39.0 20.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 2.0 9 2.0 10 3.0 11 11.0 12 27.0 13 37.0 14 68.0 15 174.0 16 412.0 17 798.0 18 1762.0 19 3206.0 20 5453.0 21 8446.0 22 12968.0 23 19357.0 24 28915.0 25 42407.0 26 55842.0 27 66259.0 28 72918.0 29 79786.0 30 89202.0 31 104204.0 32 125638.0 33 165276.0 34 294083.0 35 315369.0 36 314195.0 37 345192.0 38 435704.0 39 558858.0 40 282.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 30.517370188731167 18.076353644286982 24.044085892685942 27.362190274295912 2 31.267737936614214 21.152692988591472 27.810129281375033 19.769439793419274 3 27.447449947677953 21.130607460078423 32.31249465736765 19.109447934875973 4 23.31891789172498 24.698516646927395 29.60086842204778 22.381697039299848 5 21.21427824651708 34.2353656362523 27.77949554110657 16.77086057612405 6 82.81351837722528 2.2352143742152886 13.42097845564638 1.5302887929130558 7 78.25366707162098 7.647376413990213 12.552747074303028 1.5462094400857747 8 77.63450960752269 3.8670965982883874 15.242224225632114 3.2561695685568175 9 43.11965875792894 20.287321603746214 21.342787422498066 15.250232215826776 10 30.345706843367843 18.288819606356437 29.669381227046543 21.696092323229177 11 28.074392957798842 15.63957307243386 36.78877050974989 19.497263460017408 12 23.400777347048184 18.96346100251775 36.83059001409978 20.805171636334286 13 18.865744455499566 23.063679093139598 38.704999941211184 19.36557651014965 14 19.081324635978056 19.743413825286627 40.08809424768904 21.08716729104627 15 24.065154533555226 16.099873619932524 38.904214586172806 20.930757260339444 16 23.707845637726784 17.02806959451923 34.60490896154481 24.65917580620918 17 23.63516994893635 20.56480481953899 34.90095037683631 20.899074854688347 18 24.60451809535673 24.434411859197922 31.46104192214645 19.5000281232989 19 27.060397088269344 21.21249869314049 30.180653267689 21.546450950901168 20 25.80276129484117 23.292605923942524 33.50422342038421 17.400409360832096 21 22.798557417766364 19.551094949659294 34.30880399077556 23.341543641798783 22 23.897368072333762 21.779254665845954 32.981924504354666 21.341452757465625 23 24.46046960506944 21.182119174782965 34.595756972750905 19.761654247396688 24 27.203110913524192 18.817346959204055 31.951531321569426 22.028010805702326 25 21.078555523813126 20.970542989401807 32.34309661989725 25.607804866887818 26 18.362130849924228 21.49033146406081 35.39185288686458 24.75568479915039 27 20.516280212288006 22.57681235594754 35.17538292969779 21.731524502066666 28 22.70344664533533 23.877348096847108 31.940917556787614 21.47828770102995 29 22.6513311535923 21.039405349528117 35.52369872542667 20.785564771452915 30 27.25846773463173 21.174238295543777 32.237944081984026 19.329349887840472 31 27.38700868835158 21.4266806531088 30.596655647206084 20.58965501133353 32 27.62791572670763 20.441920303337586 29.457042375932556 22.473121594022228 33 21.989464408455802 22.428187871263294 33.13080321094984 22.451544509331057 34 21.742170044587343 24.58850211496741 31.35064605732005 22.318681783125193 35 25.400582231731534 26.577184791047063 28.188729262244838 19.833503714976565 36 23.00616138578906 25.39263779701461 28.497322884389092 23.103877932807244 37 23.182813836154615 29.069099739835654 27.705866520150106 20.04221990385963 38 22.66750602267596 24.62377540511056 28.067560743942288 24.641157828271194 39 22.538202403223277 21.874778548882265 32.563221017033825 23.023798030860636 40 19.840621928482925 22.390721917138276 32.86564975783774 24.903006396541056 41 20.221033240468188 26.713002846967626 28.059838753397436 25.006125159166746 42 19.708140535143478 21.52639919767565 29.25757350905999 29.507886758120883 43 20.540590182521797 20.780702777406155 33.07754372060758 25.60116331946447 44 23.70972052431998 23.436813302924158 29.434893291941773 23.418572880814096 45 24.052189216097204 24.026322136658894 30.46258536692325 21.45890328032065 46 21.602792881913604 24.03601434701354 30.00320637385175 24.3579863972211 47 20.443286746108896 26.44193873442613 31.651231689269643 21.463542830195333 48 22.874537991399038 24.88762597092909 30.461536701540616 21.77629933613126 49 20.670116246146552 22.294912034452153 33.366466922392725 23.668504797008573 50 20.08909206868949 23.147000324450715 34.61653961397038 22.147367992889414 51 19.373902277732988 21.108712597998576 32.37757546656871 27.139809657699733 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1581.0 1 13873.0 2 26165.0 3 89090.0 4 152015.0 5 91500.0 6 30985.0 7 27801.5 8 24618.0 9 24780.5 10 24943.0 11 25159.5 12 25376.0 13 24310.0 14 23244.0 15 21526.5 16 19809.0 17 18678.0 18 17547.0 19 15937.0 20 14327.0 21 13954.0 22 13581.0 23 13834.0 24 14087.0 25 15021.0 26 16861.0 27 17767.0 28 20546.0 29 23325.0 30 27080.0 31 30835.0 32 35668.0 33 40501.0 34 46947.5 35 53394.0 36 57802.5 37 62211.0 38 65884.5 39 69558.0 40 77294.5 41 85031.0 42 97111.0 43 109191.0 44 118380.0 45 127569.0 46 138774.0 47 149979.0 48 179536.5 49 209094.0 50 209331.5 51 209569.0 52 191021.0 53 172473.0 54 175908.0 55 179343.0 56 182020.0 57 184697.0 58 186861.0 59 189025.0 60 190565.5 61 192106.0 62 184771.0 63 177436.0 64 164069.0 65 150702.0 66 126348.5 67 101995.0 68 83391.5 69 64788.0 70 55782.5 71 46777.0 72 44817.0 73 42857.0 74 35043.0 75 20453.5 76 13678.0 77 10169.0 78 6660.0 79 4722.0 80 2784.0 81 2017.5 82 1251.0 83 834.0 84 417.0 85 292.0 86 167.0 87 128.0 88 89.0 89 72.5 90 56.0 91 50.5 92 45.0 93 30.0 94 15.0 95 12.5 96 10.0 97 5.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 3146857.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 24.303666503466157 #Duplication Level Percentage of deduplicated Percentage of total 1 77.40755872562742 18.812874921151206 2 9.462884122290934 4.599655597382078 3 3.1085721048874344 2.266490992174861 4 1.5274974582853973 1.4849515524424202 5 0.9390776552452722 1.1411515076969032 6 0.6208390326490856 0.9053198881102746 7 0.4237072446019066 0.7208347697535109 8 0.3624249712508551 0.7046604507047274 9 0.30746105753868924 0.6725187904700991 >10 4.127554465918995 25.373863687582965 >50 1.3748517613827655 23.081413336995617 >100 0.32706310432900754 11.645145136552665 >500 0.005884645755681421 0.9332295553058759 >1k 0.0035027653307627507 1.4275626741256746 >5k 5.604424529220401E-4 0.9528435166229665 >10k+ 5.604424529220401E-4 5.277483622928212 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 101694 3.2316053764120833 No Hit GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC 29171 0.926988420509734 No Hit GTGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC 12813 0.40716816811186524 No Hit CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 11305 0.35924733789937074 No Hit GAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC 9429 0.2996322997835618 No Hit CAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGA 6603 0.20982840974343606 No Hit AGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC 6599 0.20970129878796528 No Hit TGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC 5351 0.1700426806810732 No Hit CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4534 0.1440802680261607 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.04404394607063492 0.0 2 0.0 0.0 0.0 0.14598693235822283 0.0 3 0.0 0.0 0.0 0.2265117226489796 0.0 4 0.0 0.0 0.0 0.28237698757839963 0.0 5 0.0 0.0 0.0 0.6219856828575305 0.0 6 0.0 0.0 0.0 0.724087557839457 0.0 7 0.0 0.0 0.0 1.0146949797845914 0.0 8 0.0 0.0 0.0 1.3367305854698832 0.0 9 0.0 0.0 0.0 1.6127202475358746 0.0 10 0.0 0.0 0.0 1.8130153356190002 0.0 11 3.1777738867701964E-5 0.0 0.0 2.0332668437110426 0.0 12 3.1777738867701964E-5 0.0 0.0 2.21735528497164 0.0 13 6.355547773540393E-5 0.0 0.0 2.3063647315400733 0.0 14 6.355547773540393E-5 0.0 0.0 2.372811983512438 0.0 15 6.355547773540393E-5 0.0 0.0 2.5861359445313212 0.0 16 6.355547773540393E-5 0.0 0.0 2.8235474316119227 0.0 17 6.355547773540393E-5 0.0 0.0 3.1385283792685845 0.0 18 6.355547773540393E-5 0.0 0.0 3.3083168380387162 0.0 19 6.355547773540393E-5 0.0 0.0 3.5093428141157985 0.0 20 6.355547773540393E-5 0.0 0.0 3.7417016407164354 0.0 21 6.355547773540393E-5 0.0 0.0 3.9699929167420063 0.0 22 6.355547773540393E-5 0.0 0.0 4.203050853597732 0.0 23 9.53332166031059E-5 0.0 0.0 4.411290376397783 0.0 24 3.495551275447216E-4 0.0 0.0 4.59483859609763 0.0 25 3.495551275447216E-4 0.0 0.0 4.772507934106952 0.0 26 3.495551275447216E-4 0.0 0.0 4.967972805882186 0.0 27 3.495551275447216E-4 0.0 0.0 5.174178553394705 0.0 28 3.495551275447216E-4 0.0 0.0 5.3954469491305135 0.0 29 3.813328664124236E-4 0.0 0.0 5.611853350819564 0.0 30 3.813328664124236E-4 0.0 0.0 5.832676858211225 0.0 31 3.813328664124236E-4 0.0 0.0 6.0489561489448045 0.0 32 3.813328664124236E-4 0.0 0.0 6.3135376027572905 0.0 33 3.813328664124236E-4 0.0 0.0 6.556287749967666 0.0 34 3.813328664124236E-4 0.0 0.0 6.844988507580738 0.0 35 3.813328664124236E-4 0.0 0.0 7.082558883355678 0.0 36 3.813328664124236E-4 0.0 0.0 7.367636978737833 0.0 37 3.813328664124236E-4 0.0 0.0 7.705339009684901 0.0 38 3.813328664124236E-4 0.0 0.0 8.111458512414133 0.0 39 3.813328664124236E-4 0.0 0.0 8.538869100184725 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position AACGCAT 35 1.2128294E-7 45.000004 40 ACTACGT 25 3.8923565E-5 45.000004 41 CGTTTTT 27455 0.0 43.942814 1 CGTTTTA 1390 0.0 42.733814 1 TCACGAC 690 0.0 42.717392 24 CGCACTT 9685 0.0 40.818275 34 CCGCACT 9685 0.0 40.702118 33 CCCGCAC 9790 0.0 40.633297 32 ACCCGCA 9750 0.0 40.569233 31 CACGACC 1100 0.0 40.5 26 CTTACTG 9705 0.0 40.386402 38 ATGACGG 340 0.0 40.36765 1 GCACTTA 9800 0.0 40.362244 35 CGCATAC 45 1.9301297E-8 40.000004 42 ATCGGTA 45 1.9301297E-8 40.000004 26 CGGGTAC 560 0.0 39.776787 5 AGACACG 1120 0.0 39.776787 23 ACGGGCT 1745 0.0 39.71347 4 GGTACCT 1810 0.0 39.654694 7 TAGGGTA 960 0.0 39.60938 4 >>END_MODULE