SRR1043480_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1043480_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	270935
Sequences flagged as poor quality	0
Sequence length	51
%GC	38

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	18610	6.8688061712218795	No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2012	0.7426135419934671	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	773	0.2853082842748261	No Hit
CCTGTCTCTTATACACATCTGACGCGGACCTTATCGTATGCCGTCTTCTGC	392	0.1446841493347113	TruSeq Adapter, Index 23 (95% over 22bp)
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	391	0.1443150571170207	No Hit
AACTTGGGCAAAGCACAAACCAGATGAAAGATTAGACCTTGAAGATATTGA	377	0.13914776606935242	No Hit
CAATTGGGAGGAGGTGAATTAGATAGGGAAAAGATCGGGATGCTACTAGTT	350	0.1291822761917065	No Hit
CTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	347	0.12807499953863472	No Hit
CTGTCTCTTATACACATCTGACGCGGACCTTATCGTATGCCGTCTTCTGCT	345	0.12733681510325354	TruSeq Adapter, Index 20 (95% over 24bp)
GTTTGGGGTCGGAGGAGCTACTCTAGTATTAATAAATATTAGCCCACCAAC	287	0.10592946647719932	No Hit
TTTCTGGGGGGAATTCTCTTGCTTCAACAATAACGTCTCTTTCAGAAGGCA	279	0.10297672873567461	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCTATGG	45	3.8198777E-10	45.000004	1
TACGGGA	75	0.0	45.000004	3
GACCAGG	45	3.8198777E-10	45.000004	1
TCAATAC	45	3.8198777E-10	45.000004	15
CCTTTAC	45	3.8198777E-10	45.000004	21
GCGGGCT	45	3.8198777E-10	45.000004	4
TGTTAGG	65	0.0	45.000004	1
GGTTAGG	45	3.8198777E-10	45.000004	1
CAATACC	45	3.8198777E-10	45.000004	16
TGATCGG	20	7.0237333E-4	45.0	1
ATGGGTG	25	3.8828875E-5	45.0	4
TTGATAC	20	7.0237333E-4	45.0	13
CGGGTGG	35	1.207336E-7	45.0	5
GACAGTA	25	3.8828875E-5	45.0	8
CGTGGGA	40	6.7811925E-9	45.0	3
TAGAGAG	25	3.8828875E-5	45.0	2
CCTTAGC	25	3.8828875E-5	45.0	42
GATAATG	25	3.8828875E-5	45.0	13
AGTTTGC	20	7.0237333E-4	45.0	11
ATTAGAC	40	6.7811925E-9	45.0	31