SRR1043479_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1043479_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	3497497
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	194902	5.572613786373512	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	27693	0.7917948178368703	No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	19875	0.5682635324633588	No Hit
GTGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	10859	0.3104791798248862	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	8742	0.24995017865633626	No Hit
GAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	8359	0.23899949020685365	No Hit
AGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	5362	0.1533096382927562	No Hit
CAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGA	5031	0.1438457273873287	No Hit
TGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	4546	0.1299786676014304	No Hit
CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCG	4422	0.126433274996376	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	51385	44.097984	1
CGTTTTA	2740	42.37226	1
TATACGG	145	41.896553	1
TCACGAC	710	40.56338	24
GCACTTA	8685	40.46632	35
CGCACTT	8695	40.445656	34
ACTACGG	195	40.384617	1
CACTTAC	8715	40.35284	36
CGGTCTA	720	40.3125	30
GCATAGG	470	40.212765	1
CTTACTG	8655	40.16465	38
ACCCGCA	8775	40.102566	31
CCCGCAC	8850	40.04237	32
CCGCACT	8820	39.974487	33
ACTTACT	8735	39.87407	37
ACGGGCT	1920	39.374996	4
CACGGGC	1230	39.146343	3
AATGCGG	420	39.107143	1
CAACGCA	9500	38.842106	16
AACGCAA	9505	38.798	17