SRR1043478_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1043478_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	3184942
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	122571	3.8484531272469016	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	23886	0.7499665614004901	No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	13327	0.4184377611899997	No Hit
GTGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	8774	0.2754838235672738	No Hit
GAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	6712	0.21074167127690238	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5440	0.17080373834123197	No Hit
CAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGA	4637	0.1455913482882891	No Hit
TGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	4194	0.13168214680204537	No Hit
AGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	4072	0.1278516217877751	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	35000	44.106426	1
TCACGAC	615	42.439026	24
CGGTCTA	620	41.733875	30
TATACGG	195	41.53846	1
ACTTACT	7340	41.014984	37
CGCACTT	7380	41.0061	34
ATTGCGG	675	41.0	1
TTAACGG	220	40.909092	1
CTTACTG	7290	40.864197	38
CACTTAC	7400	40.773647	36
ACCCGCA	7445	40.73875	31
CCGCACT	7425	40.696968	33
CCCGCAC	7515	40.65868	32
CGACGGT	645	40.46512	27
GCACTTA	7435	40.430397	35
CACGACC	1095	40.27397	26
CGTTTTA	1910	39.816753	1
CACGACG	650	39.80769	25
TACGGGA	635	39.68504	3
TTATGAC	7935	39.555767	26