##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1043478_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 3184942 Sequences flagged as poor quality 0 Sequence length 51 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.517600948463112 31.0 31.0 33.0 30.0 34.0 2 30.52679106872276 31.0 31.0 34.0 26.0 34.0 3 31.50341356294714 31.0 31.0 34.0 28.0 34.0 4 35.124310270014334 37.0 35.0 37.0 32.0 37.0 5 35.447400298027404 37.0 35.0 37.0 33.0 37.0 6 35.7763708098923 37.0 35.0 37.0 35.0 37.0 7 33.67612094662948 37.0 35.0 37.0 32.0 37.0 8 34.706531861490724 37.0 35.0 37.0 31.0 37.0 9 36.74471842815348 39.0 37.0 39.0 32.0 39.0 10 36.721359761025475 39.0 35.0 39.0 32.0 39.0 11 36.495846706156655 39.0 35.0 39.0 32.0 39.0 12 36.501154809098566 39.0 35.0 39.0 32.0 39.0 13 36.50924381040534 39.0 35.0 39.0 32.0 39.0 14 37.738748146748044 40.0 36.0 41.0 33.0 41.0 15 37.81669556305892 40.0 36.0 41.0 33.0 41.0 16 37.60446249884613 40.0 36.0 41.0 32.0 41.0 17 37.58066771702593 40.0 36.0 41.0 32.0 41.0 18 37.37215245991921 39.0 36.0 41.0 32.0 41.0 19 37.1868191006304 38.0 35.0 41.0 32.0 41.0 20 36.92786430647717 38.0 35.0 41.0 32.0 41.0 21 36.80151004319702 38.0 35.0 40.0 32.0 41.0 22 36.73693963657737 38.0 35.0 40.0 32.0 41.0 23 36.67963184258928 38.0 35.0 40.0 32.0 41.0 24 36.54887498736241 38.0 35.0 40.0 32.0 41.0 25 36.43712098995837 38.0 35.0 40.0 31.0 41.0 26 36.17713823360049 37.0 35.0 40.0 31.0 41.0 27 36.04018346330954 37.0 35.0 40.0 31.0 41.0 28 35.89096787319832 37.0 35.0 40.0 30.0 41.0 29 35.755132432552934 37.0 35.0 40.0 30.0 41.0 30 35.571566138410056 37.0 34.0 40.0 29.0 41.0 31 35.33523938583497 37.0 34.0 40.0 28.0 41.0 32 35.191543205496366 37.0 34.0 40.0 27.0 41.0 33 34.876535899240864 37.0 34.0 40.0 25.0 41.0 34 34.71963853658873 37.0 34.0 40.0 24.0 41.0 35 34.56491421193855 37.0 34.0 40.0 23.0 41.0 36 34.451317166843225 37.0 34.0 40.0 23.0 41.0 37 34.31040565259901 36.0 34.0 40.0 22.0 41.0 38 34.1845210995993 36.0 34.0 40.0 22.0 41.0 39 34.06026514768558 36.0 33.0 40.0 22.0 41.0 40 33.966664699074585 36.0 33.0 40.0 21.0 41.0 41 33.87074992260455 35.0 33.0 40.0 21.0 41.0 42 33.75489506559303 35.0 33.0 40.0 21.0 41.0 43 33.57674456866091 35.0 33.0 40.0 20.0 41.0 44 33.35053040212349 35.0 33.0 40.0 19.0 41.0 45 33.12958540532292 35.0 33.0 40.0 19.0 41.0 46 33.121771762248734 35.0 33.0 40.0 20.0 41.0 47 33.08471520046519 35.0 33.0 39.0 20.0 41.0 48 32.996924276800016 35.0 33.0 39.0 20.0 41.0 49 32.95449242089809 35.0 33.0 39.0 20.0 41.0 50 32.87250380069715 35.0 33.0 39.0 20.0 41.0 51 32.434108062250424 35.0 32.0 38.0 18.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 1.0 10 3.0 11 13.0 12 19.0 13 35.0 14 87.0 15 185.0 16 433.0 17 948.0 18 1835.0 19 3410.0 20 6021.0 21 9564.0 22 14730.0 23 22023.0 24 34025.0 25 50280.0 26 65785.0 27 77290.0 28 81885.0 29 86086.0 30 93590.0 31 106712.0 32 127669.0 33 167454.0 34 294078.0 35 315861.0 36 317020.0 37 340708.0 38 423227.0 39 543654.0 40 310.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 29.26304466454962 16.602876912672194 23.69999202497251 30.434086397805675 2 32.73343753198645 20.004854091534476 27.029032239833565 20.2326761366455 3 25.87852463247368 20.892499769226568 34.54621779611685 18.6827578021829 4 23.3960932412584 24.132652965108942 31.261040232443793 21.21021356118887 5 21.280984080714813 32.14658226115263 29.91809583973586 16.65433781839669 6 79.51259394990552 2.358535885425857 16.621872549013453 1.5069976156551674 7 75.14887241274724 7.646575667625973 15.464049266831234 1.740502652795561 8 73.82665053241158 3.9654725266582562 18.799494621880083 3.40838231905008 9 42.885961502595656 18.29138489806094 24.655739413778964 14.166914185564448 10 29.897467520601634 19.070268783544567 31.437809542528562 19.59445415332524 11 26.401830865365838 15.99087204727747 39.23176622996588 18.37553085739081 12 22.272587695474517 17.501982767661076 39.502760175852494 20.72266936101191 13 17.983373009618386 20.544204572642137 42.19718914818543 19.275233269554047 14 19.30267489957431 18.708284169696025 41.99172229823965 19.99731863249001 15 24.105054346358585 15.628699046952818 40.51266867654105 19.75357793014755 16 23.027766282714097 16.8920815512496 37.976704128364034 22.103448037672273 17 24.06411168555032 19.357777943836968 36.63580058914731 19.942309781465408 18 23.998992760307722 23.44001868793843 33.811102368583164 18.749886183170684 19 25.60062318246298 20.96716360925882 33.132754065851124 20.299459142427086 20 25.577420248155224 22.78958298141693 34.74898443990503 16.884012330522815 21 21.986334445022862 18.77676265376261 37.20614064557534 22.030762255639193 22 23.811328432354497 20.367749240017556 35.69725916515905 20.123663162468894 23 24.45884414849627 20.118608125359895 36.33683125155811 19.085716474585723 24 25.39996018765805 18.30234271142143 34.52819548990217 21.76950161101835 25 20.267590430218196 20.075593213314402 36.16423784169382 23.492578514773584 26 18.864330967408513 19.444341529610274 37.219076516935004 24.472250986046216 27 19.98607823941535 22.522074185338383 36.90663754630383 20.58521002894244 28 22.37996798685816 22.659973085852116 34.39120712402298 20.568851803266746 29 22.53048878127137 20.05936057862278 38.381860642988165 19.028289997117685 30 26.9303805218431 20.51626057868558 33.9081841992727 18.645174700198623 31 27.19481233881182 20.858244828320263 32.67189794978998 19.275044883077932 32 26.56557011085288 20.50759480078444 31.646824337774436 21.28001075058824 33 22.27472274220378 22.41858721446105 35.11300990724478 20.193680136090393 34 21.968186547824107 24.020594409568528 33.7480556945778 20.263163348029572 35 24.046748732002026 27.46542951174621 30.22067591811719 18.26714583813457 36 23.981723999997488 25.946846127810176 29.26781712194445 20.803612750247886 37 23.61791831687987 28.509435964610972 29.0094136722113 18.86323204629786 38 23.867310613505676 24.73143937942983 28.734840383278566 22.666409623785928 39 23.074674515265897 22.273309843632948 32.65403263230539 21.997983008795767 40 20.95272064609026 23.270439461691925 32.665492809602185 23.111347082615634 41 20.27336761548562 26.22845251185108 29.45058340151877 24.04759647114453 42 19.925449191853414 21.886332623953592 31.393632913880374 26.794585270312616 43 21.16889412742838 21.08094904083026 33.59307642022994 24.15708041151142 44 23.479611245667897 23.103654634841075 31.94839968828318 21.468334431207854 45 24.189231703434473 23.875254243248385 31.524875492238163 20.41063856107898 46 21.91076007035607 23.748344553841168 31.591846884495855 22.749048491306905 47 20.515475635035113 25.204415025454153 33.43728080448561 20.842828535025127 48 22.877465272523015 24.26241984940385 32.14199819023392 20.718116687839213 49 21.37065604334396 22.204234802392005 33.87320711020797 22.55190204405606 50 20.228186258964843 23.027075532301687 35.56570260934108 21.17903559939239 51 19.752792986497088 21.300984444928666 34.105770214967805 24.84045235360644 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1450.0 1 15913.0 2 30376.0 3 109863.5 4 189351.0 5 115387.0 6 41423.0 7 36966.5 8 32510.0 9 32202.0 10 31894.0 11 31627.0 12 31360.0 13 30260.5 14 29161.0 15 26708.0 16 24255.0 17 22486.0 18 20717.0 19 19165.5 20 17614.0 21 17328.5 22 17043.0 23 16080.0 24 15117.0 25 16181.0 26 19549.0 27 21853.0 28 22900.0 29 23947.0 30 27626.5 31 31306.0 32 36773.0 33 42240.0 34 48487.0 35 54734.0 36 57554.5 37 60375.0 38 65246.5 39 70118.0 40 78969.0 41 87820.0 42 101764.0 43 115708.0 44 128640.5 45 141573.0 46 153796.0 47 166019.0 48 182185.5 49 198352.0 50 192086.0 51 185820.0 52 172420.0 53 159020.0 54 157357.5 55 155695.0 56 161451.0 57 167207.0 58 174584.5 59 181962.0 60 181381.0 61 180800.0 62 178530.5 63 176261.0 64 161500.0 65 146739.0 66 120559.0 67 94379.0 68 80002.0 69 65625.0 70 58296.5 71 50968.0 72 46927.5 73 42887.0 74 36931.5 75 24310.0 76 17644.0 77 12590.5 78 7537.0 79 5929.0 80 4321.0 81 3189.0 82 2057.0 83 1447.5 84 838.0 85 619.0 86 400.0 87 274.5 88 149.0 89 101.5 90 54.0 91 41.0 92 28.0 93 17.5 94 7.0 95 4.0 96 1.0 97 3.5 98 6.0 99 3.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 3184942.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 27.19579471239173 #Duplication Level Percentage of deduplicated Percentage of total 1 77.56137929272884 21.093433488550044 2 9.131603519836675 4.9668242944086405 3 3.025779129914088 2.4686540418654843 4 1.4633235695045232 1.5918498957619722 5 0.9089858590615691 1.236029640975274 6 0.6671162871776078 1.0885654557225117 7 0.49302416120631504 0.938572871349125 8 0.4042176700620854 0.8794416619303815 9 0.344887111275297 0.8441531169473502 >10 4.859914045465149 31.81517377155558 >50 0.964124621744728 17.48591584584713 >100 0.16591169367216824 7.046106091008718 >500 0.006652962923450726 1.2178440217135509 >1k 0.0023408573249178457 1.2725593843970788 >5k 3.696090513028177E-4 0.7011473848839724 >10k+ 3.696090513028177E-4 5.353729033083277 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 122571 3.8484531272469016 No Hit GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC 23886 0.7499665614004901 No Hit CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 13327 0.4184377611899997 No Hit GTGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC 8774 0.2754838235672738 No Hit GAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC 6712 0.21074167127690238 No Hit CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 5440 0.17080373834123197 No Hit CAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGA 4637 0.1455913482882891 No Hit TGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC 4194 0.13168214680204537 No Hit AGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC 4072 0.1278516217877751 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.05434949835821186 0.0 2 0.0 0.0 0.0 0.17366093322892537 0.0 3 0.0 0.0 0.0 0.27334877683800834 0.0 4 0.0 0.0 0.0 0.33887587277884496 0.0 5 0.0 0.0 0.0 0.7094948667825034 0.0 6 0.0 0.0 0.0 0.8484298929148474 0.0 7 0.0 0.0 0.0 1.2308230416754842 0.0 8 0.0 0.0 0.0 1.6442999589945437 0.0 9 0.0 0.0 0.0 2.046222505778755 0.0 10 0.0 0.0 0.0 2.2932285737071507 0.0 11 0.0 0.0 0.0 2.5486492375685335 0.0 12 0.0 0.0 0.0 2.7570674756400586 0.0 13 0.0 0.0 0.0 2.865797870102501 0.0 14 0.0 0.0 0.0 2.944480621625135 0.0 15 0.0 0.0 0.0 3.16621150400855 0.0 16 0.0 0.0 0.0 3.422008940822156 0.0 17 0.0 0.0 0.0 3.7465988391625342 0.0 18 0.0 0.0 0.0 3.9370575665114154 0.0 19 0.0 0.0 0.0 4.167203044827818 0.0 20 0.0 0.0 0.0 4.418447808468725 0.0 21 0.0 0.0 0.0 4.673428903885847 0.0 22 0.0 0.0 0.0 4.922507223051472 0.0 23 0.0 0.0 0.0 5.160062569428266 0.0 24 3.139774601860882E-5 0.0 0.0 5.357648585123371 0.0 25 3.139774601860882E-5 0.0 0.0 5.557966204722096 0.0 26 3.139774601860882E-5 0.0 0.0 5.779477302883381 0.0 27 3.139774601860882E-5 0.0 0.0 6.012291589611365 0.0 28 3.139774601860882E-5 0.0 0.0 6.251793596241313 0.0 29 3.139774601860882E-5 0.0 0.0 6.5101028527364075 0.0 30 3.139774601860882E-5 0.0 0.0 6.753843555078868 0.0 31 3.139774601860882E-5 0.0 0.0 7.002419510308194 0.0 32 3.139774601860882E-5 0.0 0.0 7.291404364663469 0.0 33 3.139774601860882E-5 0.0 0.0 7.573324726164558 0.0 34 3.139774601860882E-5 0.0 0.0 7.888275516477223 0.0 35 3.139774601860882E-5 0.0 0.0 8.169850502772107 0.0 36 3.139774601860882E-5 0.0 0.0 8.458395788683122 0.0 37 3.139774601860882E-5 0.0 0.0 8.83127542040012 0.0 38 3.139774601860882E-5 0.0 0.0 9.215835013636042 0.0 39 3.139774601860882E-5 0.0 0.0 9.691259683849816 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTTTTT 35000 0.0 44.106426 1 TCACGAC 615 0.0 42.439026 24 CGGTCTA 620 0.0 41.733875 30 TATACGG 195 0.0 41.53846 1 ACTTACT 7340 0.0 41.014984 37 CGCACTT 7380 0.0 41.0061 34 ATTGCGG 675 0.0 41.0 1 TTAACGG 220 0.0 40.909092 1 CTTACTG 7290 0.0 40.864197 38 CACTTAC 7400 0.0 40.773647 36 ACCCGCA 7445 0.0 40.73875 31 CCGCACT 7425 0.0 40.696968 33 CCCGCAC 7515 0.0 40.65868 32 CGACGGT 645 0.0 40.46512 27 GCACTTA 7435 0.0 40.430397 35 CACGACC 1095 0.0 40.27397 26 CGTTTTA 1910 0.0 39.816753 1 CACGACG 650 0.0 39.80769 25 TACGGGA 635 0.0 39.68504 3 TTATGAC 7935 0.0 39.555767 26 >>END_MODULE