SRR1043477_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1043477_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	561803
Sequences flagged as poor quality	0
Sequence length	51
%GC	37

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	43295	7.706438021868876	No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4743	0.8442461147412882	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1850	0.3292969243667264	No Hit
CTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	815	0.14506864505885517	No Hit
CCTGTCTCTTATACACATCTGACGCGAGGCGTATCGTATGCCGTCTTCTGC	633	0.11267294763466909	TruSeq Adapter, Index 14 (95% over 22bp)
CTGTCTCTTATACACATCTGACGCGAGGCGTATCGTATGCCGTCTTCTGCT	572	0.10181504904744189	Illumina PCR Primer Index 8 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTCGTGG	45	3.8380676E-10	45.000004	1
GTCTAGG	65	0.0	45.000004	1
AATGCGG	130	0.0	45.000004	1
GCGATAG	45	3.8380676E-10	45.000004	8
ACGTAGG	45	3.8380676E-10	45.000004	1
ATCGGTC	45	3.8380676E-10	45.000004	13
ATCGCGG	45	3.8380676E-10	45.000004	1
AGTACGG	45	3.8380676E-10	45.000004	1
GCATAAC	40	6.8048394E-9	45.0	8
TCGCCGT	20	7.030205E-4	45.0	24
AACGTGT	20	7.030205E-4	45.0	19
AGTCCGT	25	3.8882514E-5	45.0	29
ACACGGC	20	7.030205E-4	45.0	2
TCACCTA	20	7.030205E-4	45.0	35
ACGCCAT	20	7.030205E-4	45.0	42
CACGGCA	20	7.030205E-4	45.0	3
CGTGCTA	20	7.030205E-4	45.0	38
CGACGGT	55	1.8189894E-12	45.0	27
GCGGTGA	20	7.030205E-4	45.0	23
ACGTTCT	20	7.030205E-4	45.0	44