##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1043477_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 561803 Sequences flagged as poor quality 0 Sequence length 51 %GC 37 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.53294482229536 31.0 31.0 34.0 30.0 34.0 2 30.556061466385906 31.0 31.0 34.0 26.0 34.0 3 31.431676228144028 31.0 31.0 34.0 28.0 34.0 4 35.04792071242055 37.0 35.0 37.0 32.0 37.0 5 35.35532918122545 37.0 35.0 37.0 33.0 37.0 6 35.82746087151546 37.0 35.0 37.0 35.0 37.0 7 33.7582266381632 37.0 35.0 37.0 32.0 37.0 8 34.79188790376698 37.0 35.0 37.0 31.0 37.0 9 36.81320676464882 39.0 37.0 39.0 32.0 39.0 10 36.700001601985036 39.0 35.0 39.0 32.0 39.0 11 36.22341639329089 38.0 35.0 39.0 32.0 39.0 12 35.97734615158694 38.0 35.0 39.0 31.0 39.0 13 36.06227271837281 38.0 35.0 39.0 32.0 39.0 14 37.43836184570036 40.0 35.0 41.0 32.0 41.0 15 37.64395348547445 40.0 35.0 41.0 33.0 41.0 16 37.620888460901774 40.0 35.0 41.0 33.0 41.0 17 37.612077543195745 39.0 36.0 41.0 33.0 41.0 18 37.28015870331771 39.0 36.0 40.0 33.0 41.0 19 36.90418171494278 37.0 35.0 40.0 33.0 41.0 20 36.534011032336956 37.0 35.0 40.0 32.0 41.0 21 36.4258289827573 36.0 35.0 40.0 32.0 41.0 22 36.352034431998405 36.0 35.0 40.0 32.0 41.0 23 36.24629451960919 36.0 35.0 40.0 32.0 41.0 24 36.05968996249575 35.0 35.0 40.0 32.0 41.0 25 35.926321148160476 35.0 35.0 40.0 31.0 41.0 26 35.65414745026281 35.0 35.0 40.0 31.0 41.0 27 35.590906420934026 35.0 35.0 40.0 31.0 41.0 28 35.51287906970949 35.0 35.0 40.0 31.0 41.0 29 35.44563307778705 35.0 35.0 40.0 31.0 41.0 30 35.19629478660669 35.0 35.0 40.0 30.0 41.0 31 34.67612490499339 35.0 34.0 40.0 27.0 41.0 32 34.45693597221802 35.0 34.0 40.0 25.0 41.0 33 34.319334357417105 35.0 34.0 40.0 24.0 41.0 34 34.096450179155326 35.0 34.0 40.0 23.0 41.0 35 33.81412701605367 35.0 33.0 40.0 22.0 41.0 36 33.63070684919803 35.0 33.0 40.0 21.0 41.0 37 33.53466784620232 35.0 33.0 40.0 21.0 41.0 38 33.44343301833561 35.0 33.0 40.0 20.0 41.0 39 33.27290705104814 35.0 33.0 40.0 19.0 41.0 40 33.2209279765327 35.0 33.0 40.0 18.0 41.0 41 33.13737199694555 35.0 33.0 39.0 18.0 41.0 42 33.01829822909454 35.0 33.0 39.0 18.0 41.0 43 32.859594911383525 35.0 33.0 39.0 18.0 41.0 44 32.64826104524184 35.0 33.0 39.0 17.0 41.0 45 32.451464303323405 35.0 33.0 39.0 15.0 41.0 46 32.43290975662287 35.0 32.0 39.0 17.0 41.0 47 32.381993332182276 35.0 32.0 38.0 17.0 41.0 48 32.31543619382595 35.0 32.0 38.0 15.0 41.0 49 32.15904863448576 35.0 32.0 38.0 15.0 40.0 50 32.00271803461356 35.0 32.0 37.0 15.0 40.0 51 31.558220586219726 35.0 31.0 37.0 12.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 1.0 12 5.0 13 7.0 14 9.0 15 32.0 16 93.0 17 157.0 18 382.0 19 667.0 20 1207.0 21 1930.0 22 2901.0 23 4671.0 24 7296.0 25 10777.0 26 13362.0 27 14475.0 28 14655.0 29 14884.0 30 16293.0 31 19196.0 32 23389.0 33 30915.0 34 55581.0 35 83865.0 36 66387.0 37 45111.0 38 56154.0 39 77357.0 40 43.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 23.99524388442212 18.643367870944086 23.88969087028727 33.471697374346526 2 33.32467074757522 19.804273028089916 28.71219982805361 18.15885639628126 3 21.001489846084837 20.887036915075214 41.08682224908019 17.024650989759756 4 21.13712457925643 24.28751715458978 37.421480483372285 17.15387778278151 5 18.867467777850955 29.265596659327205 36.17424613254112 15.692689430280721 6 74.33691169324479 2.2440250408061186 21.849651924251027 1.5694113416980686 7 70.95173931075483 7.53911958462308 19.700144000655033 1.808997103967049 8 70.7182054919607 3.7135793151691967 23.02604293675897 2.542172256111128 9 43.913435848509174 19.28718785766541 27.776640566177115 9.022735727648303 10 34.232284270464916 21.144778507768738 36.17727210427854 8.445665117487803 11 31.12016133769311 20.083908416295394 36.964736749358764 11.831193496652741 12 16.971429486848592 33.945884945434614 36.19542793470309 12.887257633013707 13 11.905774800063368 36.60642609598027 37.56654912843114 13.92124997552523 14 10.736503721055245 24.293747096402118 51.30606280137343 13.6636863811692 15 11.907732781775819 21.49614722598491 51.38936602332134 15.20675396891793 16 13.33777142521489 22.473892093847844 38.32375405613712 25.864582424800155 17 15.485143368760937 23.620557383994033 44.34045386016094 16.553845387084085 18 20.545280107083798 25.667360266855106 37.72372166043969 16.063637965621403 19 21.47710140387289 24.707415232741724 37.52721149584463 16.288271867540757 20 14.924626603987518 30.859215774924664 39.0806029871681 15.135554633919721 21 16.216360539192564 25.968355455560044 36.56993643679368 21.24534756845371 22 13.273336027041507 30.326466750800545 36.250963416001696 20.14923380615625 23 12.50865516916072 25.223966408153746 47.980163865269496 14.287214557416034 24 12.475369480049055 26.28216652456466 45.5999700962793 15.642493899106983 25 11.760706155004511 33.382876203936256 38.34742783502402 16.508989806035213 26 12.097657007883546 34.903338002823055 37.91524787158488 15.08375711770852 27 12.984978720298754 29.83002938752552 43.88566810785987 13.299323784315856 28 11.764088123416927 26.210967189566446 42.807710175986955 19.21723451102967 29 14.285434574041078 31.712717803215718 39.117448643029675 14.884398979713529 30 20.40394942711235 29.942168340147703 35.12957388977987 14.524308342960076 31 22.35552319941332 27.80939226027629 36.01440362547014 13.820680914840256 32 20.947556349823692 29.58047571835679 34.47365001610885 14.998317915710668 33 15.64373988746945 29.386457530486666 34.95994147414663 20.009861107897255 34 16.526077646434782 28.357983136437504 37.54376534123171 17.572173875896 35 24.12215669905643 26.836809344200724 33.95478486230938 15.086249094433457 36 17.0189550429599 32.8316153527126 34.835342637899764 15.314086966427734 37 16.88438829981328 32.58615564530628 33.52919083735758 17.00026521752287 38 16.31639560486505 33.42595180161017 34.29048972682595 15.967162866698825 39 20.3859715950253 28.002520456458935 33.32680672762516 18.284701220890597 40 13.957205639699325 27.98561061439686 36.06406516163139 21.993118584272423 41 17.013437094497537 28.60468883220631 33.10341881406828 21.27845525922788 42 17.34842996566412 27.7971103749891 34.65681030539175 20.197649353955033 43 17.030702933234604 30.19118801430395 35.05801855810667 17.720090494354782 44 14.135737972207341 36.86701566207372 31.120873331043086 17.876373034675854 45 17.402363461925265 32.61160940756813 33.33001069770008 16.656016432806517 46 16.75978946356641 30.74387285222756 32.991279861446095 19.505057822759937 47 15.951143016324226 28.745307518827772 37.704319841652676 17.59922962319532 48 17.581963784458253 26.868137051599938 37.24152416416431 18.308374999777502 49 17.38705560490065 31.716989763315613 33.73175294542749 17.16420168635625 50 14.8934768949258 31.66323426539196 33.96902472930903 19.47426411037321 51 15.631636000519755 27.871335681724734 37.20467850830273 19.29234980945278 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 579.0 1 4176.5 2 7774.0 3 29969.5 4 52165.0 5 30278.0 6 8391.0 7 8353.5 8 8316.0 9 9963.0 10 11610.0 11 13074.0 12 14538.0 13 14008.5 14 13479.0 15 12178.0 16 10877.0 17 9348.5 18 7820.0 19 6924.0 20 6028.0 21 5667.5 22 5307.0 23 4846.5 24 4386.0 25 4227.0 26 4142.5 27 4217.0 28 4766.0 29 5315.0 30 5926.5 31 6538.0 32 6816.5 33 7095.0 34 9039.5 35 10984.0 36 12878.0 37 14772.0 38 15180.5 39 15589.0 40 20499.5 41 25410.0 42 30821.0 43 36232.0 44 40080.5 45 43929.0 46 42031.0 47 40133.0 48 39075.0 49 38017.0 50 38361.0 51 38705.0 52 36829.0 53 34953.0 54 30386.5 55 25820.0 56 21934.0 57 18048.0 58 15534.0 59 13020.0 60 10564.5 61 8109.0 62 7237.0 63 6365.0 64 5040.0 65 3715.0 66 3099.0 67 2483.0 68 2168.0 69 1853.0 70 1612.5 71 1372.0 72 1472.0 73 1572.0 74 1259.0 75 767.0 76 588.0 77 427.5 78 267.0 79 233.5 80 200.0 81 166.0 82 132.0 83 83.5 84 35.0 85 28.5 86 22.0 87 15.5 88 9.0 89 6.0 90 3.0 91 5.5 92 8.0 93 8.5 94 9.0 95 4.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 561803.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 35.298711563637845 #Duplication Level Percentage of deduplicated Percentage of total 1 79.08442362809389 27.91578258824632 2 9.035974071345748 6.379164848818878 3 3.469102076680084 3.6736450076864204 4 1.8421321680725762 2.6009956825157077 5 1.2349401692749038 2.1795898416792463 6 0.7860622322692097 1.664819040476408 7 0.5678610560939954 1.40313345390993 8 0.4281353918143372 1.2090102164671492 9 0.32060384870101305 1.0185212503340324 >10 2.4493387972754093 18.682199134779207 >50 0.6024348744281829 14.880387347794667 >100 0.17490044741462912 8.837864441451842 >500 0.002557024085009198 0.549139744901681 >1k 0.001022809634003679 1.1901638192428612 >5k 0.0 0.0 >10k+ 5.114048170018395E-4 7.815583581695688 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 43295 7.706438021868876 No Hit CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4743 0.8442461147412882 No Hit CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1850 0.3292969243667264 No Hit CTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 815 0.14506864505885517 No Hit CCTGTCTCTTATACACATCTGACGCGAGGCGTATCGTATGCCGTCTTCTGC 633 0.11267294763466909 TruSeq Adapter, Index 14 (95% over 22bp) CTGTCTCTTATACACATCTGACGCGAGGCGTATCGTATGCCGTCTTCTGCT 572 0.10181504904744189 Illumina PCR Primer Index 8 (95% over 21bp) >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.10840098753477642 0.0 2 0.0 0.0 0.0 0.36721057025327386 0.0 3 0.0 0.0 0.0 0.5852585336852953 0.0 4 0.0 0.0 0.0 0.7463470291187481 0.0 5 0.0 0.0 0.0 1.6560965320583905 0.0 6 0.0 0.0 0.0 1.9359099186013602 0.0 7 0.0 0.0 0.0 2.723908558694062 0.0 8 0.0 0.0 0.0 3.6260041331213966 0.0 9 0.0 0.0 0.0 4.278724036717497 0.0 10 0.0 0.0 0.0 4.732085802318607 0.0 11 0.0 0.0 0.0 5.217309270331415 0.0 12 0.0 0.0 0.0 5.610507597859036 0.0 13 0.0 0.0 0.0 5.787793942004582 0.0 14 0.0 0.0 0.0 5.922360685151201 0.0 15 0.0 0.0 0.0 6.413280099963866 0.0 16 0.0 0.0 0.0 6.964540951187516 0.0 17 0.0 0.0 0.0 7.706438021868876 0.0 18 5.339950124865834E-4 0.0 0.0 8.037870926285548 0.0 19 5.339950124865834E-4 0.0 0.0 8.44459712746283 0.0 20 5.339950124865834E-4 0.0 0.0 8.845449383502759 0.0 21 5.339950124865834E-4 0.0 0.0 9.231349779193062 0.0 22 8.89991687477639E-4 0.0 0.0 9.639499967070307 0.0 23 8.89991687477639E-4 0.0 0.0 9.965236924687124 0.0 24 0.004627956774883722 0.0 0.0 10.253060236417392 0.0 25 0.004627956774883722 0.0 0.0 10.528601662860469 0.0 26 0.004627956774883722 0.0 0.0 10.828350863202937 0.0 27 0.004627956774883722 0.0 0.0 11.106918261383438 0.0 28 0.004627956774883722 0.0 0.0 11.409515435125837 0.0 29 0.004627956774883722 0.0 0.0 11.78348994220394 0.0 30 0.004627956774883722 0.0 0.0 12.123110770145407 0.0 31 0.004627956774883722 0.0 0.0 12.42428395718784 0.0 32 0.004627956774883722 0.0 0.0 12.716379229018 0.0 33 0.004627956774883722 0.0 0.0 13.041048196609843 0.0 34 0.004627956774883722 0.0 0.0 13.427126590637643 0.0 35 0.004627956774883722 0.0 0.0 13.762475458479217 0.0 36 0.004627956774883722 0.0 0.0 14.091060389495961 0.0 37 0.004627956774883722 0.0 0.0 14.438157147612241 0.0 38 0.004627956774883722 0.0 0.0 14.781871937316106 0.0 39 0.004627956774883722 0.0 0.0 15.140538587369594 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TTCGTGG 45 3.8380676E-10 45.000004 1 GTCTAGG 65 0.0 45.000004 1 AATGCGG 130 0.0 45.000004 1 GCGATAG 45 3.8380676E-10 45.000004 8 ACGTAGG 45 3.8380676E-10 45.000004 1 ATCGGTC 45 3.8380676E-10 45.000004 13 ATCGCGG 45 3.8380676E-10 45.000004 1 AGTACGG 45 3.8380676E-10 45.000004 1 GCATAAC 40 6.8048394E-9 45.0 8 TCGCCGT 20 7.030205E-4 45.0 24 AACGTGT 20 7.030205E-4 45.0 19 AGTCCGT 25 3.8882514E-5 45.0 29 ACACGGC 20 7.030205E-4 45.0 2 TCACCTA 20 7.030205E-4 45.0 35 ACGCCAT 20 7.030205E-4 45.0 42 CACGGCA 20 7.030205E-4 45.0 3 CGTGCTA 20 7.030205E-4 45.0 38 CGACGGT 55 1.8189894E-12 45.0 27 GCGGTGA 20 7.030205E-4 45.0 23 ACGTTCT 20 7.030205E-4 45.0 44 >>END_MODULE