SRR1043476_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1043476_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	900495
Sequences flagged as poor quality	0
Sequence length	51
%GC	36

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	73502	8.162399569125869	No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	7573	0.840981904397026	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3079	0.3419230534317237	No Hit
CTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1296	0.14392084353605517	No Hit
GTGTTGGGTTAACAGAGAAGTTATAGGTGGATTATTTATAGTGTGATTATT	1281	0.14225509303216563	No Hit
CCTGTCTCTTATACACATCTGACGCGCTTAACATCGTATGCCGTCTTCTGC	1071	0.11893458597771227	No Hit
CTGTCTCTTATACACATCTGACGCGCTTAACATCGTATGCCGTCTTCTGCT	1040	0.11549203493634057	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	996	0.11060583345826461	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTGTCGG	20	7.0324715E-4	45.0	1
GATACGC	55	1.8189894E-12	45.0	8
GTACCGG	25	3.8901308E-5	45.0	1
CCCTCTA	20	7.0324715E-4	45.0	32
GCGACAT	25	3.8901308E-5	45.0	36
CTCGTCA	25	3.8901308E-5	45.0	19
CATGCGG	210	0.0	45.0	1
ATTACGA	25	3.8901308E-5	45.0	1
CAACCCG	25	3.8901308E-5	45.0	22
GTAATCG	20	7.0324715E-4	45.0	8
CTAACGG	80	0.0	45.0	1
GATGCGT	20	7.0324715E-4	45.0	10
AGTTCGG	25	3.8901308E-5	45.0	1
TAGATCA	25	3.8901308E-5	45.0	27
CATCGCG	35	1.2115379E-7	45.0	18
ATGCGAC	20	7.0324715E-4	45.0	11
TGAGGCG	20	7.0324715E-4	45.0	18
CACACGG	50	2.1827873E-11	45.0	1
GGCGAAT	20	7.0324715E-4	45.0	7
GCGTCAG	35	1.2115379E-7	45.0	8