##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1043476_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 900495 Sequences flagged as poor quality 0 Sequence length 51 %GC 36 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.48651130766967 31.0 31.0 33.0 30.0 34.0 2 30.531705339840865 31.0 31.0 34.0 26.0 34.0 3 31.397743463317397 31.0 31.0 34.0 28.0 34.0 4 35.02646766500647 37.0 35.0 37.0 32.0 37.0 5 35.33680697838411 37.0 35.0 37.0 33.0 37.0 6 35.79442417781331 37.0 35.0 37.0 35.0 37.0 7 33.766669442917504 37.0 35.0 37.0 32.0 37.0 8 34.77055508359291 37.0 35.0 37.0 31.0 37.0 9 36.717884052659926 39.0 37.0 39.0 32.0 39.0 10 36.67914424844113 39.0 35.0 39.0 32.0 39.0 11 36.37340351695456 38.0 35.0 39.0 32.0 39.0 12 36.208660792119886 39.0 35.0 39.0 32.0 39.0 13 36.27629137307814 39.0 35.0 39.0 32.0 39.0 14 37.64694973320229 40.0 35.0 41.0 33.0 41.0 15 37.83544161822109 40.0 35.0 41.0 33.0 41.0 16 37.782060977573444 40.0 35.0 41.0 33.0 41.0 17 37.752722669198604 40.0 36.0 41.0 33.0 41.0 18 37.42200012215504 39.0 36.0 41.0 33.0 41.0 19 37.091964974819405 38.0 35.0 40.0 33.0 41.0 20 36.74033836945236 38.0 35.0 40.0 32.0 41.0 21 36.64089084336948 37.0 35.0 40.0 32.0 41.0 22 36.52392961648871 37.0 35.0 40.0 32.0 41.0 23 36.41552368419592 37.0 35.0 40.0 32.0 41.0 24 36.20771575633402 36.0 35.0 40.0 32.0 41.0 25 36.05083648437804 36.0 35.0 40.0 31.0 41.0 26 35.77963675534012 35.0 35.0 40.0 31.0 41.0 27 35.70202832886357 35.0 35.0 40.0 31.0 41.0 28 35.60092282577916 35.0 35.0 40.0 31.0 41.0 29 35.52868699992782 35.0 35.0 40.0 31.0 41.0 30 35.339283394133226 35.0 35.0 40.0 30.0 41.0 31 34.85568492884469 35.0 34.0 40.0 27.0 41.0 32 34.70183621230545 35.0 34.0 40.0 25.0 41.0 33 34.580635095142114 35.0 34.0 40.0 25.0 41.0 34 34.40643312844602 35.0 34.0 40.0 24.0 41.0 35 34.2006985047113 35.0 34.0 40.0 23.0 41.0 36 34.018507598598546 35.0 33.0 40.0 22.0 41.0 37 33.958050849810384 35.0 33.0 40.0 22.0 41.0 38 33.86837794768433 35.0 33.0 40.0 21.0 41.0 39 33.72590852808733 35.0 33.0 40.0 21.0 41.0 40 33.671669470680015 35.0 33.0 40.0 21.0 41.0 41 33.60173682252539 35.0 33.0 40.0 21.0 41.0 42 33.49685672879916 35.0 33.0 40.0 20.0 41.0 43 33.31999511379852 35.0 33.0 40.0 19.0 41.0 44 33.11438264510075 35.0 33.0 40.0 18.0 41.0 45 32.932259479508495 35.0 33.0 39.0 18.0 41.0 46 32.93191744540503 35.0 33.0 39.0 18.0 41.0 47 32.92372861592791 35.0 33.0 39.0 18.0 41.0 48 32.86888322533718 35.0 33.0 39.0 18.0 41.0 49 32.76974886034903 35.0 33.0 39.0 18.0 41.0 50 32.64330507109978 35.0 33.0 39.0 18.0 41.0 51 32.260326820248864 35.0 32.0 38.0 15.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 1.0 10 2.0 11 3.0 12 3.0 13 15.0 14 28.0 15 69.0 16 138.0 17 313.0 18 604.0 19 1161.0 20 1928.0 21 3006.0 22 4474.0 23 6972.0 24 10956.0 25 15985.0 26 19505.0 27 21389.0 28 21735.0 29 22471.0 30 24916.0 31 29119.0 32 35887.0 33 46953.0 34 81948.0 35 122419.0 36 116157.0 37 76661.0 38 92722.0 39 142883.0 40 71.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 23.908405932292794 18.45718188329752 24.29763630003498 33.3367758843747 2 33.744773707794046 19.707494211516998 28.750742647099653 17.796989433589303 3 21.235986873886027 20.683401906729078 40.969799943364485 17.11081127602041 4 21.26419358241856 23.883530724768047 37.67761064747722 17.174665045336177 5 18.47494988867234 30.35330568187497 35.30902448097991 15.862719948472783 6 75.33600963914292 2.064864324621458 21.195009411490346 1.404116624745279 7 71.7430968522868 7.282439102937828 19.195664606688542 1.77879943808683 8 71.05491979411323 3.702741270079234 22.473528448242355 2.7688104875651725 9 40.07018362123054 21.204226564278535 28.10420935152333 10.62138046296759 10 29.09721875190867 24.74394638504378 35.565105858444525 10.593729004603023 11 27.102315948450574 22.286742291739543 37.960121932936886 12.650819826872997 12 16.48915318796884 32.747322306064994 36.403311512001736 14.36021299396443 13 12.052815395976657 35.4176314138335 37.57622196680715 14.953331223382696 14 10.656250173515676 27.01669637255065 47.46433905796256 14.862714395971105 15 12.697905041116275 24.010683013231613 46.797816756339564 16.493595189312547 16 13.92023276087041 25.914191639042972 36.66527854124676 23.500297058839863 17 15.701031099561908 26.10619714712464 41.80867189712325 16.384099856190208 18 18.619648082443547 27.76284154825957 37.33457709370957 16.282933275587315 19 19.66207474777761 27.934635950227378 36.52124664767712 15.882042654317901 20 15.217963453433944 31.300673518453735 37.500930044031335 15.980432984080977 21 16.17943464427898 27.73552323999578 36.23840221211667 19.84663990360857 22 12.633051821498176 31.335099028867457 36.12268807711314 19.909161072521226 23 12.25226125630903 27.967506760170796 45.614578648410046 14.165653335110134 24 13.380196447509427 28.555738788110986 42.606677438519924 15.457387325859667 25 12.600181011554756 33.21040094614629 37.185547948628255 17.003870093670702 26 12.749765406804038 34.14288807822364 36.823969039250635 16.283377475721686 27 12.954763768816042 31.503006679659524 41.07696322578138 14.465266325743064 28 12.352872586743956 27.519308824590922 40.75125347725418 19.376565111410944 29 13.951770970410719 32.197180439647084 38.68905435343894 15.161994236503256 30 18.267730525988483 31.29045691536322 34.80674517904042 15.63506737960788 31 18.36445510524767 29.91921110056136 36.28326642568809 15.43306736850288 32 17.186880549031365 31.21427659231867 35.26160611663585 16.337236742014113 33 13.76476271384072 31.500119378786113 35.76388541857534 18.971232488797828 34 13.678365787705651 31.19617543684307 37.0461801564695 18.079278618981782 35 19.616988434139003 30.242366698315926 33.883808349852025 16.256836517693046 36 13.752214060044754 35.05694090472463 35.74689476343566 15.443950271794957 37 14.655828183388026 33.80562912620281 34.92012726333849 16.61841542707067 38 13.982753929783065 34.74000410885124 34.336892486909974 16.940349474455715 39 17.46272883247547 31.12665811581408 33.73522340490508 17.675389646805368 40 13.027723640886402 30.4071649481674 35.81652313449825 20.748588276447954 41 15.564550608276559 30.90544644889755 32.65004247663785 20.87996046618804 42 15.244726511529768 29.372622835218408 35.42240656527799 19.960244087973837 43 14.971765528959072 31.62727166724968 35.484816684157046 17.916146119634202 44 13.021282738938028 36.78421312722447 32.718116147230134 17.476387986607367 45 16.260056968667232 33.16409308213816 33.971315776323024 16.60453417287159 46 15.122238324477093 33.17630858583335 32.94843391690126 18.7530191727883 47 14.643945829793614 31.162083076530127 36.17843519397665 18.015535899699607 48 15.581652313449826 29.10099445305082 36.65850448919761 18.658848744301746 49 15.782541824218901 32.5271100894508 33.998523034553216 17.691825051777077 50 13.955768771620052 31.612724112849044 34.69780509608604 19.73370201944486 51 13.728782502956708 29.959633312789073 36.4777150345088 19.833869149745418 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1519.0 1 7159.0 2 12799.0 3 50283.0 4 87767.0 5 50168.5 6 12570.0 7 12933.0 8 13296.0 9 16609.5 10 19923.0 11 22696.0 12 25469.0 13 24680.5 14 23892.0 15 21275.0 16 18658.0 17 15638.0 18 12618.0 19 10806.5 20 8995.0 21 8227.0 22 7459.0 23 6783.5 24 6108.0 25 6218.5 26 7521.5 27 8714.0 28 8787.0 29 8860.0 30 10477.5 31 12095.0 32 13361.5 33 14628.0 34 17883.0 35 21138.0 36 22381.0 37 23624.0 38 26399.0 39 29174.0 40 36726.0 41 44278.0 42 52358.5 43 60439.0 44 66063.5 45 71688.0 46 73008.0 47 74328.0 48 69363.0 49 64398.0 50 56897.5 51 49397.0 52 44010.5 53 38624.0 54 34875.5 55 31127.0 56 27703.5 57 24280.0 58 22129.0 59 19978.0 60 16803.0 61 13628.0 62 11621.5 63 9615.0 64 7837.0 65 6059.0 66 5295.5 67 4532.0 68 4068.0 69 3604.0 70 3112.0 71 2620.0 72 2569.0 73 2518.0 74 2077.5 75 1326.5 76 1016.0 77 780.0 78 544.0 79 416.5 80 289.0 81 201.5 82 114.0 83 101.5 84 89.0 85 52.5 86 16.0 87 13.5 88 11.0 89 10.0 90 9.0 91 7.5 92 6.0 93 7.5 94 9.0 95 8.0 96 7.0 97 3.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 900495.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 33.11832042301896 #Duplication Level Percentage of deduplicated Percentage of total 1 78.4645947826845 25.986155918752868 2 9.214881128790438 6.103627717666247 3 3.4136245364213176 3.3916053360324225 4 1.8693565900302405 2.4763980213401435 5 1.1110442190311975 1.839795922500903 6 0.8234254729229592 1.636228119404309 7 0.6179018470334755 1.4324709952020922 8 0.46135727970139184 1.222350257491446 9 0.35532937647632595 1.059112093126905 >10 2.8522994547544958 20.651567026274545 >50 0.6397693526682237 14.772426151526261 >100 0.17083758922504086 8.431010755034011 >500 0.003137833271480333 0.7389850148899236 >1k 0.0017432407063779627 0.8968275954140683 >5k 3.486481412755926E-4 0.8744271121502174 >10k+ 3.486481412755926E-4 8.48701196319362 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 73502 8.162399569125869 No Hit CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 7573 0.840981904397026 No Hit CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3079 0.3419230534317237 No Hit CTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1296 0.14392084353605517 No Hit GTGTTGGGTTAACAGAGAAGTTATAGGTGGATTATTTATAGTGTGATTATT 1281 0.14225509303216563 No Hit CCTGTCTCTTATACACATCTGACGCGCTTAACATCGTATGCCGTCTTCTGC 1071 0.11893458597771227 No Hit CTGTCTCTTATACACATCTGACGCGCTTAACATCGTATGCCGTCTTCTGCT 1040 0.11549203493634057 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 996 0.11060583345826461 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.1215997867839355 0.0 2 0.0 0.0 0.0 0.3827894657938134 0.0 3 0.0 0.0 0.0 0.6214359879843864 0.0 4 0.0 0.0 0.0 0.7823474866601147 0.0 5 0.0 0.0 0.0 1.7236075713912904 0.0 6 0.0 0.0 0.0 2.0201111610836264 0.0 7 0.0 0.0 0.0 2.803569148079667 0.0 8 0.0 0.0 0.0 3.700964469541752 0.0 9 0.0 0.0 0.0 4.319624206686322 0.0 10 0.0 0.0 0.0 4.78725589814491 0.0 11 0.0 0.0 0.0 5.306747955291256 0.0 12 0.0 0.0 0.0 5.709193277030966 0.0 13 0.0 0.0 0.0 5.885429680342479 0.0 14 0.0 0.0 0.0 6.019022870754418 0.0 15 0.0 0.0 0.0 6.480324710298225 0.0 16 0.0 0.0 0.0 7.021360473961543 0.0 17 0.0 0.0 0.0 7.663118618093382 0.0 18 0.0 0.0 0.0 7.99215986762836 0.0 19 0.0 0.0 0.0 8.35373877700598 0.0 20 0.0 0.0 0.0 8.759515599753469 0.0 21 0.0 0.0 0.0 9.151078018201101 0.0 22 1.1105003359263516E-4 0.0 0.0 9.558409541418886 0.0 23 1.1105003359263516E-4 0.0 0.0 9.877123137829749 0.0 24 6.66300201555811E-4 0.0 0.0 10.152194071038707 0.0 25 6.66300201555811E-4 0.0 0.0 10.423267203038328 0.0 26 6.66300201555811E-4 0.0 0.0 10.722435993536887 0.0 27 6.66300201555811E-4 0.0 0.0 10.999505827350513 0.0 28 7.773502351484462E-4 0.0 0.0 11.294454716572552 0.0 29 7.773502351484462E-4 0.0 0.0 11.655256275715024 0.0 30 7.773502351484462E-4 0.0 0.0 11.992071027601487 0.0 31 7.773502351484462E-4 0.0 0.0 12.28935196752897 0.0 32 7.773502351484462E-4 0.0 0.0 12.590408608598604 0.0 33 7.773502351484462E-4 0.0 0.0 12.89746195148224 0.0 34 7.773502351484462E-4 0.0 0.0 13.289024369929871 0.0 35 7.773502351484462E-4 0.0 0.0 13.602962814896252 0.0 36 7.773502351484462E-4 0.0 0.0 13.911459808216591 0.0 37 7.773502351484462E-4 0.0 0.0 14.244165708860127 0.0 38 7.773502351484462E-4 0.0 0.0 14.573318008428698 0.0 39 7.773502351484462E-4 0.0 0.0 14.92445821464861 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTGTCGG 20 7.0324715E-4 45.0 1 GATACGC 55 1.8189894E-12 45.0 8 GTACCGG 25 3.8901308E-5 45.0 1 CCCTCTA 20 7.0324715E-4 45.0 32 GCGACAT 25 3.8901308E-5 45.0 36 CTCGTCA 25 3.8901308E-5 45.0 19 CATGCGG 210 0.0 45.0 1 ATTACGA 25 3.8901308E-5 45.0 1 CAACCCG 25 3.8901308E-5 45.0 22 GTAATCG 20 7.0324715E-4 45.0 8 CTAACGG 80 0.0 45.0 1 GATGCGT 20 7.0324715E-4 45.0 10 AGTTCGG 25 3.8901308E-5 45.0 1 TAGATCA 25 3.8901308E-5 45.0 27 CATCGCG 35 1.2115379E-7 45.0 18 ATGCGAC 20 7.0324715E-4 45.0 11 TGAGGCG 20 7.0324715E-4 45.0 18 CACACGG 50 2.1827873E-11 45.0 1 GGCGAAT 20 7.0324715E-4 45.0 7 GCGTCAG 35 1.2115379E-7 45.0 8 >>END_MODULE