SRR1043475_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1043475_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	418557
Sequences flagged as poor quality	0
Sequence length	51
%GC	39

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	24089	5.7552495836887205	No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2602	0.6216596544795571	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1000	0.2389160855032887	No Hit
CAAGGGGCATCATGATCTTTATAATTTGAGAGGCCTTTGCTTCAAAACGAG	805	0.19232744883014738	No Hit
GCATCGGGATTTAACAAAACTATTTGCCAGAGAACTACTAGCCATAGCTTA	569	0.13594325265137128	No Hit
CCTGTCTCTTATACACATCTGACGCGGGAATATTCGTATGCCGTCTTCTGC	525	0.12543094488922654	No Hit
CTGTCTCTTATACACATCTGACGCGGGAATATTCGTATGCCGTCTTCTGCT	487	0.11635213364010158	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	472	0.11276839235755225	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	467	0.11157381193003582	No Hit
CTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	437	0.10440632936493716	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TATTTAG	20	7.0281397E-4	45.000004	38
CTATGTG	20	7.0281397E-4	45.000004	16
CATGGGT	40	6.7975634E-9	45.000004	3
AGCGTGG	20	7.0281397E-4	45.000004	1
TGATATC	20	7.0281397E-4	45.000004	22
AACCGAT	20	7.0281397E-4	45.000004	32
GTACCCA	20	7.0281397E-4	45.000004	8
CGAACAT	20	7.0281397E-4	45.000004	12
GTCGACT	20	7.0281397E-4	45.000004	33
TTTACGG	20	7.0281397E-4	45.000004	1
ACTTGAC	20	7.0281397E-4	45.000004	34
TTTAACG	20	7.0281397E-4	45.000004	12
TTAGATT	20	7.0281397E-4	45.000004	12
CGTTGGT	40	6.7975634E-9	45.000004	32
TGTGGCA	20	7.0281397E-4	45.000004	19
ACATTGT	20	7.0281397E-4	45.000004	32
GTCTATG	20	7.0281397E-4	45.000004	14
CGTCTAT	20	7.0281397E-4	45.000004	13
GCTGATA	20	7.0281397E-4	45.000004	29
CCTAAGA	40	6.7975634E-9	45.000004	30