##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1043475_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 418557 Sequences flagged as poor quality 0 Sequence length 51 %GC 39 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.543720449066676 31.0 31.0 34.0 30.0 34.0 2 30.59822915397425 31.0 31.0 34.0 26.0 34.0 3 31.464202008328616 31.0 31.0 34.0 28.0 34.0 4 35.059812642005745 37.0 35.0 37.0 32.0 37.0 5 35.35359102822316 37.0 35.0 37.0 33.0 37.0 6 35.80695341375249 37.0 35.0 37.0 35.0 37.0 7 33.863992240005544 37.0 35.0 37.0 32.0 37.0 8 34.825963966675985 37.0 35.0 37.0 32.0 37.0 9 36.82895280690563 39.0 37.0 39.0 32.0 39.0 10 36.721192095700225 39.0 35.0 39.0 32.0 39.0 11 36.09473261706291 37.0 35.0 39.0 32.0 39.0 12 35.678942175139824 38.0 35.0 39.0 31.0 39.0 13 35.80228021512004 38.0 35.0 39.0 31.0 39.0 14 37.19972429083733 39.0 35.0 41.0 32.0 41.0 15 37.426106838495116 39.0 35.0 41.0 33.0 41.0 16 37.37240566995654 39.0 35.0 41.0 33.0 41.0 17 37.37666315460021 39.0 35.0 41.0 33.0 41.0 18 37.103536674813704 39.0 35.0 40.0 32.0 41.0 19 36.78991630769525 37.0 35.0 40.0 32.0 41.0 20 36.38939021447497 36.0 35.0 40.0 32.0 41.0 21 36.34365689738793 36.0 35.0 40.0 32.0 41.0 22 36.30004993346187 36.0 35.0 40.0 32.0 41.0 23 36.20872187061738 35.0 35.0 40.0 32.0 41.0 24 36.056085551071895 35.0 35.0 40.0 32.0 41.0 25 35.95097441925473 35.0 35.0 40.0 31.0 41.0 26 35.670087945011076 35.0 35.0 40.0 31.0 41.0 27 35.64118387698689 35.0 35.0 40.0 31.0 41.0 28 35.58500992696335 35.0 35.0 40.0 31.0 41.0 29 35.504870304402985 36.0 35.0 40.0 31.0 41.0 30 35.30177729676006 35.0 35.0 40.0 30.0 41.0 31 34.82635817821706 35.0 34.0 40.0 28.0 41.0 32 34.598592306424216 35.0 34.0 40.0 26.0 41.0 33 34.46501671218018 35.0 34.0 40.0 25.0 41.0 34 34.278822239264905 35.0 34.0 40.0 24.0 41.0 35 34.02684222220629 35.0 34.0 40.0 23.0 41.0 36 33.81764490857876 35.0 33.0 40.0 22.0 41.0 37 33.772996270519904 35.0 33.0 40.0 22.0 41.0 38 33.717328822597636 35.0 33.0 40.0 21.0 41.0 39 33.527736962946506 35.0 33.0 40.0 21.0 41.0 40 33.51806563980533 35.0 33.0 40.0 21.0 41.0 41 33.42420984477622 35.0 33.0 40.0 20.0 41.0 42 33.297789787293006 35.0 33.0 40.0 20.0 41.0 43 33.111289501788285 35.0 33.0 39.0 18.0 41.0 44 32.88864838002948 35.0 33.0 39.0 18.0 41.0 45 32.74584823572417 35.0 33.0 39.0 18.0 41.0 46 32.761941623243665 35.0 33.0 39.0 18.0 41.0 47 32.7332860279484 35.0 33.0 39.0 18.0 41.0 48 32.686656775540726 35.0 33.0 39.0 18.0 41.0 49 32.515215370905274 35.0 33.0 39.0 18.0 41.0 50 32.36754850593826 35.0 32.0 38.0 17.0 40.0 51 31.919709860305765 35.0 31.0 38.0 15.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 4.0 12 5.0 13 3.0 14 8.0 15 19.0 16 53.0 17 127.0 18 296.0 19 516.0 20 905.0 21 1411.0 22 2183.0 23 3374.0 24 5374.0 25 7866.0 26 9863.0 27 10376.0 28 10323.0 29 10438.0 30 11739.0 31 13976.0 32 17160.0 33 23222.0 34 44359.0 35 65195.0 36 41162.0 37 32578.0 38 42521.0 39 63446.0 40 55.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 24.934716179636226 18.67630931987758 24.260256070260443 32.12871843022575 2 31.886218603439914 21.32349954725402 28.759523792458374 18.03075805684769 3 21.83669129891508 22.371624414356944 38.40743315725218 17.384251129475796 4 22.793789137441255 25.11485890810571 34.497332501905355 17.594019452547684 5 18.492343934040047 31.603580874289523 32.99574490451719 16.90833028715324 6 77.54117121443436 2.3621633373710154 18.621358620211822 1.4753068279828077 7 74.30576958454881 7.1901795932214725 16.594872382972927 1.9091784392567799 8 73.5486445095889 3.8637509347591843 19.897170516799385 2.690434038852534 9 44.972847186882554 21.32373846333952 24.424630337086704 9.278784012691222 10 37.039638567745854 20.12509646236952 33.11950343680789 9.715761533076737 11 34.32435725600097 19.44346887042864 33.99608655451946 12.23608731905093 12 16.16721258992204 38.24425347085344 33.08557735266643 12.502956586558103 13 10.932561156544987 40.729697508344145 35.21479750667173 13.122943828439137 14 10.142704577871115 22.961508229464563 54.36822224929938 12.527564943364942 15 11.529612454217705 19.03229428727748 52.45354874007603 16.984544518428795 16 12.305372983846883 20.14683782615032 35.59873565607551 31.94905353392728 17 15.891742343336752 22.306878155185554 44.593926275274335 17.207453226203363 18 22.417257386688075 24.303260965651035 35.67566663560758 17.603815012053317 19 23.790308130075474 23.34664095929587 35.36579247270981 17.497258437918852 20 14.180625338962196 28.922464562771616 38.783964908005366 18.112945190260824 21 17.322610779415946 24.242098447762192 33.89669746295009 24.53859330987177 22 12.130964241429483 29.44234596482677 34.865502189665925 23.56118760407782 23 12.066217982258092 23.62665061150572 49.708402917643234 14.598728488592952 24 12.212673542671608 24.940211249602804 45.63942306543672 17.207692142288863 25 12.396161096338133 32.94342228179197 36.51927933351969 18.14113728835021 26 12.59637277598989 34.73338159438261 35.93512950446415 16.73511612516336 27 12.336909907133316 29.064858549731575 44.469450994727126 14.128780548407981 28 11.594597629474599 24.869253172208325 42.267361434643306 21.268787763673767 29 14.269979954940426 31.98632444326579 37.961376825617535 15.782318776176243 30 24.673819814266633 28.770275016306023 31.731639896119283 14.824265273308058 31 25.0708983483731 26.077451816598458 33.902192532916665 14.94945730211178 32 23.372204980444717 29.47651096505374 30.8173080368982 16.333976017603337 33 16.583882243039778 28.506033825739387 33.10039014996763 21.809693781253213 34 15.391929892463871 26.927993080990163 37.110118812969326 20.569958213576644 35 26.697200142393985 26.932293570529225 30.99100003105909 15.3795062560177 36 16.522241892979928 33.083666023982396 35.02724837955165 15.366843703486024 37 17.223699520017586 32.81464651170569 32.320090214713886 17.641563753562835 38 16.353567136614608 32.507639341833965 33.633411936725466 17.50538158482596 39 21.58152891959757 25.38889565817798 32.80915144173912 20.220423980485332 40 14.193048975408368 24.62555876499497 35.489789921086015 25.691602338510645 41 18.766619600197824 25.124893383696843 31.385689404310526 24.722797611794807 42 17.86925078304747 25.147351495734156 33.60402525820856 23.37937246300982 43 16.94106179086719 29.205102291922007 34.57187432058238 19.281961596628417 44 13.809349742090085 39.25797442164389 29.10356295558311 17.829112880682917 45 18.439782395229322 32.965402561658266 31.922772764521916 16.67204227859049 46 17.615521900242978 30.114177997262022 31.65136409139018 20.618936011104818 47 17.574667249621914 26.869936472212864 36.90441206335099 18.65098421481423 48 18.503095157887696 23.745391906000858 37.40756933942092 20.343943596690533 49 18.15332200871088 31.77990094539095 32.293809445308526 17.772967600589645 50 14.993895694015391 30.635492895830197 33.10803546470373 21.262575945450678 51 16.61231325721467 25.456269994289904 37.52702738217256 20.404389366322867 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 664.0 1 2531.5 2 4399.0 3 16548.0 4 28697.0 5 16774.5 6 4852.0 7 4845.5 8 4839.0 9 5788.5 10 6738.0 11 7368.5 12 7999.0 13 7936.5 14 7874.0 15 6973.5 16 6073.0 17 5318.0 18 4563.0 19 4103.5 20 3644.0 21 3388.5 22 3133.0 23 2790.0 24 2447.0 25 2507.0 26 2962.0 27 3357.0 28 3430.0 29 3503.0 30 3983.0 31 4463.0 32 5567.0 33 6671.0 34 7386.5 35 8102.0 36 9606.5 37 11111.0 38 12813.5 39 14516.0 40 19317.5 41 24119.0 42 30170.0 43 36221.0 44 40543.5 45 44866.0 46 42967.5 47 41069.0 48 37133.5 49 33198.0 50 27911.0 51 22624.0 52 20267.5 53 17911.0 54 15715.0 55 13519.0 56 12668.0 57 11817.0 58 10860.0 59 9903.0 60 8343.0 61 6783.0 62 5398.0 63 4013.0 64 3706.5 65 3400.0 66 2957.5 67 2515.0 68 2032.5 69 1550.0 70 1524.5 71 1499.0 72 1483.0 73 1467.0 74 1177.5 75 695.5 76 503.0 77 387.0 78 271.0 79 199.5 80 128.0 81 82.5 82 37.0 83 30.0 84 23.0 85 19.0 86 15.0 87 9.0 88 3.0 89 2.0 90 1.0 91 1.0 92 1.0 93 1.0 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 418557.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 35.25892962946845 #Duplication Level Percentage of deduplicated Percentage of total 1 80.49427962130792 28.381421407424522 2 8.583449686336532 6.052864969372456 3 3.239216779078671 3.4263394940438485 4 1.691015141160733 2.384935354582078 5 1.0120158035501405 1.7841297000642182 6 0.7124497359940845 1.507212906356928 7 0.4634142997980288 1.1437644530107665 8 0.3707627199564512 1.0458157321739865 9 0.28381698410085776 0.9006374763054098 >10 2.245601314598773 18.455709411522466 >50 0.6920012474184546 17.163117668744803 >100 0.20787389250514843 10.619930704663368 >500 0.002735182796120374 0.698946129513692 >1k 6.837956990300935E-4 0.6273397133475773 >5k 0.0 0.0 >10k+ 6.837956990300935E-4 5.807834878873861 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 24089 5.7552495836887205 No Hit CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2602 0.6216596544795571 No Hit CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1000 0.2389160855032887 No Hit CAAGGGGCATCATGATCTTTATAATTTGAGAGGCCTTTGCTTCAAAACGAG 805 0.19232744883014738 No Hit GCATCGGGATTTAACAAAACTATTTGCCAGAGAACTACTAGCCATAGCTTA 569 0.13594325265137128 No Hit CCTGTCTCTTATACACATCTGACGCGGGAATATTCGTATGCCGTCTTCTGC 525 0.12543094488922654 No Hit CTGTCTCTTATACACATCTGACGCGGGAATATTCGTATGCCGTCTTCTGCT 487 0.11635213364010158 No Hit GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT 472 0.11276839235755225 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 467 0.11157381193003582 No Hit CTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 437 0.10440632936493716 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.12399744837620683 0.0 2 0.0 0.0 0.0 0.4061573453555908 0.0 3 0.0 0.0 0.0 0.6715931163497445 0.0 4 0.0 0.0 0.0 0.8362062992615104 0.0 5 0.0 0.0 0.0 1.8714296977472602 0.0 6 0.0 0.0 0.0 2.135193056142891 0.0 7 0.0 0.0 0.0 2.9682934462928587 0.0 8 0.0 0.0 0.0 3.902455340610717 0.0 9 0.0 0.0 0.0 4.60224055504985 0.0 10 0.0 0.0 0.0 5.051402795796032 0.0 11 0.0 0.0 0.0 5.606643778505675 0.0 12 0.0 0.0 0.0 6.0971385020439275 0.0 13 0.0 0.0 0.0 6.291377279558101 0.0 14 0.0 0.0 0.0 6.462202280692952 0.0 15 0.0 0.0 0.0 7.071677214811841 0.0 16 0.0 0.0 0.0 7.729413198202395 0.0 17 0.0 0.0 0.0 8.726648939093122 0.0 18 0.0 0.0 0.0 9.095296459024697 0.0 19 0.0 0.0 0.0 9.549475937566449 0.0 20 0.0 0.0 0.0 9.960411604632105 0.0 21 0.0 0.0 0.0 10.318068984630528 0.0 22 2.3891608550328868E-4 0.0 0.0 10.724226329986118 0.0 23 2.3891608550328868E-4 0.0 0.0 11.042701471962003 0.0 24 0.002389160855032887 0.0 0.0 11.28090080920878 0.0 25 0.003822657368052619 0.0 0.0 11.53295727941475 0.0 26 0.003822657368052619 0.0 0.0 11.805082700802997 0.0 27 0.004061573453555908 0.0 0.0 12.076252457849229 0.0 28 0.005017237795569062 0.0 0.0 12.351244872263514 0.0 29 0.005017237795569062 0.0 0.0 12.692655958447714 0.0 30 0.005017237795569062 0.0 0.0 13.01997099558722 0.0 31 0.005017237795569062 0.0 0.0 13.25171959852541 0.0 32 0.005017237795569062 0.0 0.0 13.53005683813674 0.0 33 0.005017237795569062 0.0 0.0 13.805766000807536 0.0 34 0.005017237795569062 0.0 0.0 14.21431250701816 0.0 35 0.005017237795569062 0.0 0.0 14.498622648767073 0.0 36 0.005017237795569062 0.0 0.0 14.783649538772497 0.0 37 0.005256153881072351 0.0 0.0 15.069871009205437 0.0 38 0.005256153881072351 0.0 0.0 15.390257479865348 0.0 39 0.005256153881072351 0.0 0.0 15.703954300131166 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TATTTAG 20 7.0281397E-4 45.000004 38 CTATGTG 20 7.0281397E-4 45.000004 16 CATGGGT 40 6.7975634E-9 45.000004 3 AGCGTGG 20 7.0281397E-4 45.000004 1 TGATATC 20 7.0281397E-4 45.000004 22 AACCGAT 20 7.0281397E-4 45.000004 32 GTACCCA 20 7.0281397E-4 45.000004 8 CGAACAT 20 7.0281397E-4 45.000004 12 GTCGACT 20 7.0281397E-4 45.000004 33 TTTACGG 20 7.0281397E-4 45.000004 1 ACTTGAC 20 7.0281397E-4 45.000004 34 TTTAACG 20 7.0281397E-4 45.000004 12 TTAGATT 20 7.0281397E-4 45.000004 12 CGTTGGT 40 6.7975634E-9 45.000004 32 TGTGGCA 20 7.0281397E-4 45.000004 19 ACATTGT 20 7.0281397E-4 45.000004 32 GTCTATG 20 7.0281397E-4 45.000004 14 CGTCTAT 20 7.0281397E-4 45.000004 13 GCTGATA 20 7.0281397E-4 45.000004 29 CCTAAGA 40 6.7975634E-9 45.000004 30 >>END_MODULE