SRR1043474_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1043474_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1075401
Sequences flagged as poor quality	0
Sequence length	51
%GC	36

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	86859	8.076894107407377	No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	9036	0.8402447087179573	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3592	0.33401493954348194	No Hit
CTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1574	0.1463640074725614	No Hit
GTGTTGGGTTAACAGAGAAGTTATAGGTGGATTATTTATAGTGTGATTATT	1317	0.12246594526134902	No Hit
GCGAAGGGTCAAAAAGCGACGTCGCTATGAACGCTTGGCCGCCACAAGCCA	1175	0.10926156847538733	No Hit
CCTGTCTCTTATACACATCTGACGCGTTGTCCCTCGTATGCCGTCTTCTGC	1162	0.10805271707948942	TruSeq Adapter, Index 13 (95% over 21bp)
CTGCAGTGGGATTGTTTGCCTACTACGACAACTAAAATTTCACTTCACATC	1103	0.10256639151349126	No Hit
CTGTCTCTTATACACATCTGACGCGTTGTCCCTCGTATGCCGTCTTCTGCT	1078	0.10024167729061066	Illumina Single End Adapter 1 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTGTCGG	40	6.8139343E-9	45.000004	1
ATTGTCG	20	7.0330827E-4	45.000004	10
ATTCGTT	20	7.0330827E-4	45.000004	43
CAATTCG	20	7.0330827E-4	45.000004	17
CCGTCGG	40	6.8139343E-9	45.000004	26
AGACGCA	20	7.0330827E-4	45.000004	21
GCCGATG	40	6.8139343E-9	45.000004	8
ACGCTTA	20	7.0330827E-4	45.000004	32
GCGATCG	20	7.0330827E-4	45.000004	8
CCGAATA	20	7.0330827E-4	45.000004	24
ATACGAG	20	7.0330827E-4	45.000004	2
TTCGCAT	20	7.0330827E-4	45.000004	27
AACAGCG	20	7.0330827E-4	45.000004	38
TCGGTCA	20	7.0330827E-4	45.000004	10
AGTACGG	40	6.8139343E-9	45.000004	1
CGCTTGT	20	7.0330827E-4	45.000004	32
ACGGTAC	20	7.0330827E-4	45.000004	37
CAGCGTA	25	3.890637E-5	45.0	35
ACCGGCC	35	1.211829E-7	45.0	20
GTCGATT	25	3.890637E-5	45.0	8