SRR1043473_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1043473_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	752621
Sequences flagged as poor quality	0
Sequence length	51
%GC	36

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	61366	8.153639082619273	No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6233	0.8281724799068854	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2498	0.33190676316499274	No Hit
GTGTTGGGTTAACAGAGAAGTTATAGGTGGATTATTTATAGTGTGATTATT	1592	0.21152744874246135	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	1161	0.1542609095414558	No Hit
CTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1078	0.14323278250274707	No Hit
GCGAAGGGTCAAAAAGCGACGTCGCTATGAACGCTTGGCCGCCACAAGCCA	1075	0.14283417550134794	No Hit
CCTGTCTCTTATACACATCTGACGCCAGCAAGATCGTATGCCGTCTTCTGC	799	0.10616233137262979	Illumina Single End Adapter 1 (95% over 21bp)
CTGTCTCTTATACACATCTGACGCCAGCAAGATCGTATGCCGTCTTCTGCT	779	0.10350495136330239	Illumina Single End Adapter 1 (95% over 22bp)
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	766	0.10177765435723957	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACAACGG	35	1.2111741E-7	45.000004	1
AAGTAGG	100	0.0	45.000004	1
TCTTGAC	35	1.2111741E-7	45.000004	28
CGTATTT	25	3.889517E-5	45.000004	1
GGTCGTA	25	3.889517E-5	45.000004	8
ACGTTGG	30	2.1644992E-6	45.000004	1
CTATCCG	25	3.889517E-5	45.000004	15
CCTAGAC	25	3.889517E-5	45.000004	41
ACGCAGT	25	3.889517E-5	45.000004	13
TAGACGG	35	1.2111741E-7	45.000004	1
CCGGCTA	25	3.889517E-5	45.000004	11
ACCGCGT	25	3.889517E-5	45.000004	34
GACCGAT	100	0.0	45.000004	8
GTGATTA	200	0.0	45.000004	43
CACGAGA	30	2.1644992E-6	45.000004	3
TCGATGG	35	1.2111741E-7	45.000004	1
GCACCGG	30	2.1644992E-6	45.000004	1
AGTATGC	25	3.889517E-5	45.000004	7
ATCGTCG	30	2.1644992E-6	45.000004	32
AGTATCT	35	1.2111741E-7	45.000004	24