FastQCFastQC Report
Thu 26 May 2016
SRR1043473_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1043473_1.fastq.gz
File typeConventional base calls
EncodingIllumina 1.5
Total Sequences752621
Sequences flagged as poor quality0
Sequence length51
%GC36

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT613668.153639082619273No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT62330.8281724799068854No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT24980.33190676316499274No Hit
GTGTTGGGTTAACAGAGAAGTTATAGGTGGATTATTTATAGTGTGATTATT15920.21152744874246135No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT11610.1542609095414558No Hit
CTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT10780.14323278250274707No Hit
GCGAAGGGTCAAAAAGCGACGTCGCTATGAACGCTTGGCCGCCACAAGCCA10750.14283417550134794No Hit
CCTGTCTCTTATACACATCTGACGCCAGCAAGATCGTATGCCGTCTTCTGC7990.10616233137262979Illumina Single End Adapter 1 (95% over 21bp)
CTGTCTCTTATACACATCTGACGCCAGCAAGATCGTATGCCGTCTTCTGCT7790.10350495136330239Illumina Single End Adapter 1 (95% over 22bp)
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC7660.10177765435723957No Hit

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ACAACGG351.2111741E-745.0000041
AAGTAGG1000.045.0000041
TCTTGAC351.2111741E-745.00000428
CGTATTT253.889517E-545.0000041
GGTCGTA253.889517E-545.0000048
ACGTTGG302.1644992E-645.0000041
CTATCCG253.889517E-545.00000415
CCTAGAC253.889517E-545.00000441
ACGCAGT253.889517E-545.00000413
TAGACGG351.2111741E-745.0000041
CCGGCTA253.889517E-545.00000411
ACCGCGT253.889517E-545.00000434
GACCGAT1000.045.0000048
GTGATTA2000.045.00000443
CACGAGA302.1644992E-645.0000043
TCGATGG351.2111741E-745.0000041
GCACCGG302.1644992E-645.0000041
AGTATGC253.889517E-545.0000047
ATCGTCG302.1644992E-645.00000432
AGTATCT351.2111741E-745.00000424