SRR1043471_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1043471_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	2473330
Sequences flagged as poor quality	0
Sequence length	51
%GC	50

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	63400	2.563345772703198	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	23885	0.9657021101106605	No Hit
GTGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	9768	0.3949331468101709	No Hit
GAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	7344	0.2969276238916764	No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6310	0.25512163763023943	No Hit
AGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	4892	0.19779002397577355	No Hit
TGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	3901	0.1577225845317851	No Hit
CAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGA	3346	0.1352832011902981	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GCGATAT	95	45.0	8
CGTTTTT	18715	43.593376	1
AATACGG	190	41.44737	1
CTTACTG	7400	41.0777	38
GCACTTA	7450	40.892616	35
CGCACTT	7460	40.86796	34
CACTTAC	7475	40.785954	36
CCGCACT	7490	40.674236	33
ACCCGCA	7560	40.59524	31
ACTTACT	7505	40.532978	37
AATGCGG	400	40.5	1
CCCGCAC	7625	40.485245	32
CGTTTTA	960	40.312496	1
CACGACG	415	40.120483	25
CGACGGT	410	40.060978	27
CACGACC	710	39.929577	26
CGCATCG	85	39.705883	20
CTTATGA	7950	39.396225	25
TTATCGG	80	39.375	1
ACGACCA	715	39.335663	27