SRR1043470_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1043470_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1053654
Sequences flagged as poor quality	0
Sequence length	51
%GC	38

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	67685	6.423835528551118	No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6858	0.650877802390538	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2842	0.2697280131807975	No Hit
GCGAAGGGTCAAAAAGCGACGTCGCTATGAACGCTTGGCCGCCACAAGCCA	1251	0.11872967786389081	No Hit
CTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1210	0.11483845740632125	No Hit
GTGTTGGGTTAACAGAGAAGTTATAGGTGGATTATTTATAGTGTGATTATT	1147	0.10885926499590948	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTCACGG	70	0.0	45.000004	1
CACGACG	225	0.0	45.000004	25
TACCCGA	25	3.8905833E-5	45.0	39
CGAACGT	20	7.0330204E-4	45.0	42
CTACTCG	25	3.8905833E-5	45.0	42
ACGTTCT	25	3.8905833E-5	45.0	43
GACGTTG	20	7.0330204E-4	45.0	27
CACATCG	25	3.8905833E-5	45.0	16
TTGTCGT	25	3.8905833E-5	45.0	16
GCACGGT	20	7.0330204E-4	45.0	21
TGACGTT	20	7.0330204E-4	45.0	41
CGTTATG	25	3.8905833E-5	45.0	42
AATTCGC	25	3.8905833E-5	45.0	12
GTATCGG	75	0.0	45.0	1
ACATCGC	25	3.8905833E-5	45.0	17
ATACGCC	20	7.0330204E-4	45.0	10
AATACGG	25	3.8905833E-5	45.0	1
AATACGC	20	7.0330204E-4	45.0	9
GCGTAAC	20	7.0330204E-4	45.0	15
CCGCAAT	20	7.0330204E-4	45.0	32