SRR1043469_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1043469_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1732090
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	51594	2.9787135772390583	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	14681	0.8475887511618911	No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5746	0.33173795818923957	No Hit
GTGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	4848	0.27989307714957073	No Hit
GAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	3131	0.1807642789924311	No Hit
CAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGA	2220	0.12816885958581828	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2182	0.1259749782055205	No Hit
AGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	1966	0.11350449457014358	No Hit
TGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	1808	0.10438256672574751	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AACGTAT	20	7.034279E-4	45.0	18
ACCGCAT	25	3.8916274E-5	45.0	18
CGAATCG	25	3.8916274E-5	45.0	35
ATAAGCG	55	1.8189894E-12	45.0	32
CTCGAAT	25	3.8916274E-5	45.0	25
CCGAATA	20	7.034279E-4	45.0	8
AATACGA	20	7.034279E-4	45.0	23
ATCGCAC	25	3.8916274E-5	45.0	38
CGTTTTT	14015	0.0	43.795933	1
CGGTCTA	545	0.0	43.761467	30
TCACGAC	545	0.0	42.935776	24
ATTAGCG	175	0.0	42.42857	10
CACGACG	575	0.0	41.869564	25
GCGTAGG	265	0.0	41.603775	1
CACTTAC	3890	0.0	41.413883	36
GCGCGAC	2490	0.0	41.29518	8
CGCACTT	3895	0.0	41.18742	34
ACGGGCT	790	0.0	41.01266	4
CGACGGT	580	0.0	40.732758	27
ACCCGCA	3950	0.0	40.670887	31