SRR1043468_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1043468_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	4244303
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	106252	2.5034027966429355	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	36712	0.8649712332036615	No Hit
GTGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	15708	0.37009610294081263	No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	12310	0.29003584334106214	No Hit
GAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	10093	0.23780111834616896	No Hit
AGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	6708	0.15804715167602312	No Hit
TGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	5600	0.13194156967586904	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4949	0.11660336220104928	No Hit
CAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGA	4421	0.10416315706018162	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACGTATA	30	2.1668893E-6	45.000004	15
CGTTTTT	33395	0.0	43.996105	1
ACGGGAT	550	0.0	41.727272	4
CCTACGG	65	0.0	41.538464	1
CGTTTTA	1790	0.0	40.977654	1
ACGTAGG	430	0.0	40.813953	1
CGCACTT	11545	0.0	40.790386	34
AACACGT	690	0.0	40.76087	40
CTTACTG	11530	0.0	40.745884	38
GCACTTA	11555	0.0	40.696667	35
AAACACG	710	0.0	40.56338	39
CACTTAC	11635	0.0	40.513535	36
CCGCACT	11625	0.0	40.509678	33
TAGTAGG	900	0.0	40.5	1
ACCCGCA	11625	0.0	40.490322	31
TAGCATA	4240	0.0	40.489388	29
ACTTACT	11645	0.0	40.40146	37
TATACGG	340	0.0	40.36765	1
TCACGAC	970	0.0	40.360825	24
CCCGCAC	11765	0.0	40.25712	32