SRR1043467_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1043467_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	3093961
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	118985	3.8457175122763343	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	34333	1.1096778530821816	No Hit
GTGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	14354	0.46393603539281847	No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	12341	0.39887380610162826	No Hit
GAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	9865	0.31884694086318477	No Hit
AGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	6299	0.20359015514416634	No Hit
TGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	5197	0.16797238232802547	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5109	0.1651281318672084	No Hit
CAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGA	4945	0.15982748328114024	No Hit
CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCG	4035	0.13041534783405478	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTACGTA	20	7.0351403E-4	45.0	37
CGTTTTT	32765	0.0	43.667786	1
CGTTTTA	1630	0.0	41.54908	1
AACACGT	620	0.0	41.370968	40
ACGTAGG	185	0.0	41.351353	1
CACTTAC	10280	0.0	41.125973	36
CGGTCTA	1005	0.0	40.97015	30
CTTACTG	10270	0.0	40.881207	38
ACTTACT	10285	0.0	40.821587	37
CGACGGT	1010	0.0	40.767326	27
ACGGGAT	740	0.0	40.743244	4
CGCACTT	10440	0.0	40.711205	34
GCACTTA	10440	0.0	40.474136	35
AGGGTAC	1315	0.0	40.38023	5
CCGCACT	10575	0.0	40.12766	33
CACGACG	1040	0.0	40.024036	25
TCACGAC	1035	0.0	39.782608	24
CCCGCAC	10725	0.0	39.776222	32
ACCCGCA	10675	0.0	39.751755	31
TAGGGTA	1280	0.0	39.55078	4