##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1043467_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 3093961 Sequences flagged as poor quality 0 Sequence length 51 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.511685829265463 31.0 31.0 33.0 30.0 34.0 2 30.52489607981484 31.0 31.0 34.0 26.0 34.0 3 31.512183573096106 31.0 31.0 34.0 28.0 34.0 4 35.13632654063836 37.0 35.0 37.0 32.0 37.0 5 35.467452240025004 37.0 35.0 37.0 33.0 37.0 6 35.74627799122226 37.0 35.0 37.0 35.0 37.0 7 33.65186762211935 37.0 35.0 37.0 31.0 37.0 8 34.694921493839125 37.0 35.0 37.0 31.0 37.0 9 36.724328781132016 39.0 37.0 39.0 32.0 39.0 10 36.72665557193513 39.0 35.0 39.0 32.0 39.0 11 36.60263881800708 39.0 35.0 39.0 32.0 39.0 12 36.62712749126443 39.0 35.0 39.0 33.0 39.0 13 36.64140498215718 39.0 35.0 39.0 33.0 39.0 14 37.874433452781076 40.0 36.0 41.0 33.0 41.0 15 37.93656513446679 40.0 36.0 41.0 33.0 41.0 16 37.73728692766328 40.0 36.0 41.0 32.0 41.0 17 37.702655269410315 40.0 36.0 41.0 32.0 41.0 18 37.51677412869781 39.0 36.0 41.0 32.0 41.0 19 37.29939032844952 39.0 35.0 41.0 32.0 41.0 20 37.01687965685411 38.0 35.0 41.0 32.0 41.0 21 36.92997520007524 38.0 35.0 41.0 32.0 41.0 22 36.87256594378533 38.0 35.0 40.0 32.0 41.0 23 36.814450473034405 38.0 35.0 40.0 32.0 41.0 24 36.6890170884507 38.0 35.0 40.0 32.0 41.0 25 36.58639814787581 38.0 35.0 40.0 31.0 41.0 26 36.319733506660235 38.0 35.0 40.0 31.0 41.0 27 36.18744968019959 38.0 35.0 40.0 31.0 41.0 28 35.99494337517506 37.0 35.0 40.0 30.0 41.0 29 35.88725003320986 37.0 35.0 40.0 30.0 41.0 30 35.73223482778225 37.0 35.0 40.0 30.0 41.0 31 35.50144975970932 38.0 34.0 40.0 29.0 41.0 32 35.37173642460264 38.0 34.0 40.0 27.0 41.0 33 35.048955691425974 37.0 34.0 40.0 25.0 41.0 34 34.9166453617224 37.0 34.0 40.0 24.0 41.0 35 34.76722783512785 37.0 34.0 40.0 23.0 41.0 36 34.6380012547023 37.0 34.0 40.0 23.0 41.0 37 34.500092276534836 37.0 34.0 40.0 23.0 41.0 38 34.37598922546212 37.0 34.0 40.0 22.0 41.0 39 34.258287677187916 37.0 34.0 40.0 22.0 41.0 40 34.14834252920447 36.0 33.0 40.0 22.0 41.0 41 34.04802549224117 36.0 33.0 40.0 22.0 41.0 42 33.92097056168452 36.0 33.0 40.0 21.0 41.0 43 33.74000480290476 35.0 33.0 40.0 21.0 41.0 44 33.49976098599821 35.0 33.0 40.0 20.0 41.0 45 33.283313525930026 35.0 33.0 40.0 20.0 41.0 46 33.28233355236217 35.0 33.0 40.0 20.0 41.0 47 33.235991662467626 35.0 33.0 40.0 20.0 41.0 48 33.149639248846384 35.0 33.0 39.0 20.0 41.0 49 33.09895793773742 35.0 33.0 39.0 20.0 41.0 50 33.02058009134569 35.0 33.0 39.0 20.0 41.0 51 32.59069296607165 35.0 32.0 39.0 18.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 7.0 11 8.0 12 19.0 13 35.0 14 85.0 15 175.0 16 440.0 17 930.0 18 1832.0 19 3435.0 20 5832.0 21 9078.0 22 13908.0 23 20567.0 24 31310.0 25 46505.0 26 62124.0 27 73857.0 28 79085.0 29 82550.0 30 88367.0 31 100831.0 32 119250.0 33 155018.0 34 269090.0 35 292768.0 36 306896.0 37 338724.0 38 429124.0 39 561708.0 40 402.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 29.844429196101697 16.889967262030776 22.50186734739061 30.76373619447692 2 33.355139253532926 19.945015467227933 25.977315163313307 20.72253011592583 3 26.17111204698443 21.21390670405994 33.47420992055168 19.140771328403947 4 23.0139940354775 23.774346218326606 30.836296902255718 22.37536284394018 5 20.880773868836744 33.48477889669586 29.25065959137817 16.38378764308923 6 80.47186115144956 2.1279841601106155 15.965844430488943 1.434310257950892 7 75.99685322471744 7.454812778829469 14.934803638442759 1.6135303580103306 8 75.22619063394788 3.8358272777194022 17.743727215695348 3.1942548726373734 9 40.46476345370869 21.596361427955944 23.82544576353742 14.113429354797944 10 27.01524033431578 18.906702443889888 32.62953217574494 21.448525046049387 11 24.618183616406284 15.419392810704466 40.47956648451613 19.482857088373123 12 21.803797785427808 16.995883270668248 40.401931375347004 20.79838756855694 13 18.387917624042448 21.227675461972535 41.41587434360032 18.968532570384696 14 18.984563800254755 19.760688644750207 40.87963616865242 20.37511138634262 15 23.41516263456456 15.620591209779308 40.64576121030614 20.31848494534999 16 22.246595868532278 16.816566207524914 37.60755226067814 23.329285663264663 17 22.350669578575815 20.469650393136824 36.52870866827345 20.650971360013912 18 23.688598531138563 24.05692896581437 33.15099964091338 19.103472862133685 19 24.97510472821086 20.66396441325537 32.92510797647417 21.4358228820596 20 25.548576727373103 22.207552066751973 35.21556994415896 17.02830126171597 21 21.893003822607977 18.474214768705878 36.195058696602835 23.437722712083314 22 22.874399515701718 21.10058918001875 35.1544185592514 20.870592745028137 23 24.018079090201848 20.61137810075822 36.06700278381014 19.303540025229797 24 26.11025155132854 18.155594075038437 33.96051210729547 21.773642266337554 25 20.188166560599825 20.000769240465537 34.79904885678908 25.012015342145556 26 19.05919305382324 19.43473107773498 37.30593242771968 24.2001434407221 27 20.574887660187056 21.675192415159724 36.86180918246868 20.888110742184534 28 22.913281712342204 22.805297157915046 34.29448528924573 19.98693584049702 29 21.920735264600943 19.211328132448987 38.84318515973536 20.0247514432147 30 26.90793452147587 20.461537815117904 33.160534344162706 19.46999331924352 31 26.185656509568155 21.753732513111835 32.098336081159395 19.96227489616062 32 26.614233340368543 20.089684388394037 30.96199338000705 22.334088891230365 33 21.71236159731813 22.217022127945373 33.836657928138074 22.233958346598424 34 21.384529410681 24.077872991934935 32.18515036227024 22.35244723511382 35 25.000250487966717 26.118137882151714 29.36821117008262 19.513400459798945 36 23.377347031846877 25.07410403686407 28.953887912614285 22.594661018674767 37 22.84531059053427 29.256412734355735 28.022040355389095 19.876236319720903 38 22.385156115413217 24.679205717201995 27.980184624175937 24.95545354320885 39 21.728586753355973 22.612179015831163 33.4686507037419 22.190583527070963 40 20.183512332573034 23.320429701602574 33.54405566198152 22.95200230384287 41 20.568585059734108 27.110102551389627 28.513223017355422 23.808089371520843 42 19.698406023863907 22.075391383407872 30.464799006839456 27.761403585888765 43 21.26587891702578 21.018913942354153 34.137502056425404 23.577705084194662 44 24.55040642076613 22.717868777272887 31.27437611527747 21.45734868668351 45 24.59132484216834 23.549036332390745 31.287401489546895 20.57223733589402 46 22.05774410213962 24.190447132332952 30.50494172357053 23.246867041956897 47 20.10270976266346 26.68640619581178 32.462723350423616 20.74816069110115 48 23.084841728774215 25.044756543472914 31.16726422860534 20.703137499147534 49 21.002139328840926 22.045138901233727 34.0486838715808 22.904037898344548 50 20.01418246707053 22.917612730089356 35.6037131689766 21.464491633863517 51 19.76818712323782 21.37421900276054 33.13752177225246 25.72007210174918 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1337.0 1 14609.0 2 27881.0 3 105512.5 4 183144.0 5 111497.0 6 39850.0 7 35321.0 8 30792.0 9 30119.0 10 29446.0 11 28954.0 12 28462.0 13 27153.0 14 25844.0 15 24446.5 16 23049.0 17 21284.0 18 19519.0 19 18398.5 20 17278.0 21 16748.0 22 16218.0 23 16331.5 24 16445.0 25 16829.0 26 19615.0 27 22017.0 28 24044.5 29 26072.0 30 29502.5 31 32933.0 32 37408.0 33 41883.0 34 48649.5 35 55416.0 36 57273.0 37 59130.0 38 62622.5 39 66115.0 40 73350.5 41 80586.0 42 90631.0 43 100676.0 44 112131.0 45 123586.0 46 140086.0 47 156586.0 48 178727.0 49 200868.0 50 192144.5 51 183421.0 52 164561.5 53 145702.0 54 147910.5 55 150119.0 56 158458.5 57 166798.0 58 171957.5 59 177117.0 60 177781.5 61 178446.0 62 174373.0 63 170300.0 64 160034.5 65 149769.0 66 126307.5 67 102846.0 68 85513.0 69 68180.0 70 59657.0 71 51134.0 72 48368.5 73 45603.0 74 38274.5 75 23019.5 76 15093.0 77 11535.0 78 7977.0 79 6244.5 80 4512.0 81 3314.5 82 2117.0 83 1488.0 84 859.0 85 623.5 86 388.0 87 276.0 88 164.0 89 105.0 90 46.0 91 47.0 92 48.0 93 34.5 94 21.0 95 14.5 96 8.0 97 4.5 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 3093961.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 27.020482910183414 #Duplication Level Percentage of deduplicated Percentage of total 1 76.01208420998842 20.53883222363414 2 8.437596440392909 4.559758608413221 3 2.8793198474226127 2.334018381907038 4 1.5487215214016379 1.6738881360666484 5 1.1162431831518445 1.508071492698157 6 0.8456462918214139 1.3709862705732292 7 0.6962068125916712 1.316829099711056 8 0.5796882835490457 1.2530765887096436 9 0.5289962893197475 1.286436167560321 >10 6.664846879907118 40.027551889276616 >50 0.5853629146859094 10.225192804608161 >100 0.09501797507744249 4.3186011417975765 >500 0.006465887471609261 1.1876264474437614 >1k 0.002789206360302026 1.3256141978274973 >5k 5.07128429145823E-4 0.9067864331324649 >10k+ 5.07128429145823E-4 6.1667301166405135 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 118985 3.8457175122763343 No Hit GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC 34333 1.1096778530821816 No Hit GTGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC 14354 0.46393603539281847 No Hit CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 12341 0.39887380610162826 No Hit GAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC 9865 0.31884694086318477 No Hit AGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC 6299 0.20359015514416634 No Hit TGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC 5197 0.16797238232802547 No Hit CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 5109 0.1651281318672084 No Hit CAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGA 4945 0.15982748328114024 No Hit CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCG 4035 0.13041534783405478 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.04111234756999199 0.0 2 0.0 0.0 0.0 0.13461708146935272 0.0 3 0.0 0.0 0.0 0.21687409763730053 0.0 4 0.0 0.0 0.0 0.27256322881897993 0.0 5 0.0 0.0 0.0 0.5925737266888625 0.0 6 0.0 0.0 0.0 0.7383738838337005 0.0 7 0.0 0.0 0.0 1.086018860612658 0.0 8 0.0 0.0 0.0 1.465532370963952 0.0 9 0.0 0.0 0.0 1.8291439355570416 0.0 10 0.0 0.0 0.0 2.0551002420521782 0.0 11 0.0 0.0 0.0 2.2713279191302025 0.0 12 0.0 0.0 0.0 2.445182728547645 0.0 13 0.0 0.0 0.0 2.53981869842574 0.0 14 0.0 0.0 0.0 2.607369646870145 0.0 15 0.0 0.0 0.0 2.772271531541606 0.0 16 0.0 0.0 0.0 2.956404427851547 0.0 17 3.232102796383018E-5 0.0 0.0 3.2147787253944053 0.0 18 3.232102796383018E-5 0.0 0.0 3.3540500348905495 0.0 19 3.232102796383018E-5 0.0 0.0 3.517691399471422 0.0 20 3.232102796383018E-5 0.0 0.0 3.7011132331661583 0.0 21 3.232102796383018E-5 0.0 0.0 3.896461526179548 0.0 22 3.232102796383018E-5 0.0 0.0 4.093846043954659 0.0 23 3.232102796383018E-5 0.0 0.0 4.27561950522324 0.0 24 3.232102796383018E-5 0.0 0.0 4.429079745995505 0.0 25 6.464205592766037E-5 0.0 0.0 4.5773363012655945 0.0 26 6.464205592766037E-5 0.0 0.0 4.737131463518771 0.0 27 6.464205592766037E-5 0.0 0.0 4.918872603759388 0.0 28 9.696308389149056E-5 0.0 0.0 5.1034256734328585 0.0 29 9.696308389149056E-5 0.0 0.0 5.291695661322169 0.0 30 9.696308389149056E-5 0.0 0.0 5.47582855763211 0.0 31 9.696308389149056E-5 0.0 0.0 5.669948651582874 0.0 32 9.696308389149056E-5 0.0 0.0 5.895452463686517 0.0 33 9.696308389149056E-5 0.0 0.0 6.108835890303724 0.0 34 9.696308389149056E-5 0.0 0.0 6.3697958700836885 0.0 35 9.696308389149056E-5 0.0 0.0 6.593812914900996 0.0 36 9.696308389149056E-5 0.0 0.0 6.831372470435148 0.0 37 9.696308389149056E-5 0.0 0.0 7.1371617160009455 0.0 38 9.696308389149056E-5 0.0 0.0 7.443338813902308 0.0 39 9.696308389149056E-5 0.0 0.0 7.8149013513745 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TTACGTA 20 7.0351403E-4 45.0 37 CGTTTTT 32765 0.0 43.667786 1 CGTTTTA 1630 0.0 41.54908 1 AACACGT 620 0.0 41.370968 40 ACGTAGG 185 0.0 41.351353 1 CACTTAC 10280 0.0 41.125973 36 CGGTCTA 1005 0.0 40.97015 30 CTTACTG 10270 0.0 40.881207 38 ACTTACT 10285 0.0 40.821587 37 CGACGGT 1010 0.0 40.767326 27 ACGGGAT 740 0.0 40.743244 4 CGCACTT 10440 0.0 40.711205 34 GCACTTA 10440 0.0 40.474136 35 AGGGTAC 1315 0.0 40.38023 5 CCGCACT 10575 0.0 40.12766 33 CACGACG 1040 0.0 40.024036 25 TCACGAC 1035 0.0 39.782608 24 CCCGCAC 10725 0.0 39.776222 32 ACCCGCA 10675 0.0 39.751755 31 TAGGGTA 1280 0.0 39.55078 4 >>END_MODULE